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CDCgov
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multisignal-epi-inference
Python package for statistical inference and forecast of epi models using multiple signals
https://cdcgov.github.io/multisignal-epi-inference/
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Forecasting Interface
#241
damonbayer
opened
4 hours ago
5
Demo sampling from model components
#240
seabbs
opened
5 hours ago
0
Demo of a model fitting to multiple data sources
#239
seabbs
opened
5 hours ago
0
Interface for counterfactual prediction
#238
damonbayer
opened
6 hours ago
0
Feedback & feature request
#237
zsusswein
opened
10 hours ago
0
Rename `SeedInfectionsExponential`
#236
dylanhmorris
opened
10 hours ago
1
Switch from `.rst` to `.md` documentation source?
#235
dylanhmorris
closed
12 hours ago
2
add arviz plot for posterior predictive
#234
sbidari
opened
1 day ago
4
Move tutorials in modeldocs to docssourcetutorials
#233
gvegayon
opened
1 day ago
0
Move tutorials in `./model/docs/` to `./docs/source/tutorials`
#232
gvegayon
opened
1 day ago
2
Build sphinx using either Markdown or a hybrid with rst
#231
gvegayon
opened
1 day ago
4
221 demonstrate use of predictive distributions in tutorials using arviz
#230
sbidari
closed
1 day ago
3
Demonstrate use of prior and predictive distributions in tutorials
#229
damonbayer
closed
11 hours ago
2
Use `scope` effect handler for distributions with multiple RandomVariable arguments
#228
damonbayer
opened
4 days ago
0
Ensure existing codebase follows new practices in developer documentation
#227
damonbayer
opened
4 days ago
0
Add `__call__` method for `RandomVariable` class that is an alias for `sample`
#226
damonbayer
opened
4 days ago
0
Rename `Model.sample` to `Model.model`
#225
damonbayer
opened
4 days ago
0
Add Developer Documentation
#224
damonbayer
opened
5 days ago
5
Consider using `chex` in validation and/or testing
#223
dylanhmorris
opened
5 days ago
1
Update CODEOWNERS file
#222
damonbayer
closed
5 days ago
1
Demonstrate use of predictive distributions in tutorials using ArviZ
#221
damonbayer
opened
5 days ago
1
Update tutorials formatting
#220
damonbayer
closed
5 days ago
6
Add diagnostics using arviz to tutorials
#219
sbidari
closed
5 days ago
1
Create methods for simulating from prior and computing predictive distributions
#218
damonbayer
closed
1 day ago
5
Adding `t_start` and `t_unit`
#217
gvegayon
opened
6 days ago
3
Using the new `timeseries_*` attributes in `RandomVariable`, remove padding whenever possible (hopefully everywhere).
#216
gvegayon
opened
6 days ago
0
Incorporating attributes `timeseries_start` and `timeseries_unit` in all instances of `RandomVariable`, adding the corresponding values of `*_start` and `*_unit` when needed (e.g., the weekly effects should have `timeseries_unit = 7`).
#215
gvegayon
opened
6 days ago
0
Create and name a subclass of `RandomVariable` to represent differenced timeseries
#214
dylanhmorris
opened
1 week ago
1
Consider using `numpyro.contrib.control_flow.scan` over `jax.lax.scan`
#213
damonbayer
opened
1 week ago
0
200 add diagnostics using arviz to tutorials
#212
sbidari
closed
1 week ago
1
201 add visualizations using arviz to tutorials
#211
sbidari
closed
6 days ago
11
User testing of `cfaepim` and `Model 2` reimplimentations
#210
dylanhmorris
opened
1 week ago
0
Create and validate replication of site-level infection dynamics wastewater-informed model ("model 1")
#209
dylanhmorris
opened
1 week ago
1
Separate pipeline from pyrenew
#208
damonbayer
opened
1 week ago
4
Remove unneeded abstractions in model code (2)
#207
damonbayer
closed
1 week ago
1
Should we call the infection seeding process "seeding"?
#206
dylanhmorris
opened
1 week ago
0
Renaming infections_mean_varname to infections_varname
#205
gvegayon
closed
1 week ago
7
Clean up Rt infections renewal model
#204
damonbayer
closed
1 week ago
10
Fix dangling sentence in demo doc
#203
brandomr
closed
2 weeks ago
1
Create methods for simulating from prior and predictive distributions
#202
damonbayer
closed
1 day ago
1
Add visualizations using Arviz to tutorials
#201
sbidari
closed
6 days ago
0
add diagnostics using Arviz to tutorials
#200
sbidari
closed
5 days ago
0
Sync package versions and update numpyro
#199
damonbayer
closed
2 weeks ago
1
Remove default name arguments for NumPyro sites from non-model classes
#198
damonbayer
opened
2 weeks ago
1
Adding Repository Structure And Resources Sections To The README
#197
AFg6K7h4fhy2
closed
2 weeks ago
5
Implement infection seeding method from EpiAware
#196
damonbayer
opened
2 weeks ago
0
Rename data variables in models for clarity
#195
damonbayer
closed
2 weeks ago
1
Track new rst files in git
#194
damonbayer
opened
2 weeks ago
0
Resources And Repository Structure To README
#193
AFg6K7h4fhy2
closed
2 weeks ago
0
Pseudo-Random Number Generation For None Input For JAX PRNGKey In Metaclass
#192
AFg6K7h4fhy2
closed
2 weeks ago
7
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