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Clinical-Genomics-Lund
/
bonsai
Visualize and analyze resistance and outbreak of bacterial pathogen
https://bonsai-wgs.readthedocs.io/en/latest/
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#174
LordRust
closed
3 days ago
0
This PR fixes several breaking bugs in Bonsai
#173
mhkc
closed
5 months ago
0
Release v0.5.0
#172
mhkc
closed
5 months ago
0
Fix dockerfile for api and frontend
#171
ryanjameskennedy
closed
5 months ago
0
Fix generation of URLs in the samples table when Bonsai is hosted under a URL subpath
#170
mhkc
closed
5 months ago
0
Docker image build for api and app does not work with version 17
#169
ryanjameskennedy
closed
5 months ago
0
167 sourmash clustering does not work with dynamic sample ids
#168
mhkc
closed
5 months ago
0
Sourmash clustering does not work with dynamic sample ids
#167
mhkc
closed
5 months ago
0
Display lims id and sample id in sample view
#166
mhkc
closed
5 months ago
0
Display LIMS ID and Sample ID in sample view
#165
mhkc
closed
5 months ago
0
Invalid URL in samples tables when hosting Bonsai under a different route
#164
mhkc
closed
5 months ago
0
Release v0.4.0
#163
mhkc
closed
5 months ago
0
RS Lims Export file changes
#162
LordRust
closed
5 months ago
0
changing amr abreviations to what KM is using
#161
LordRust
closed
5 months ago
0
Added new upload script
#160
mhkc
closed
5 months ago
3
156 error when removing signature from database
#159
mhkc
closed
6 months ago
0
Conflicting UID and GID for containers
#158
mhkc
opened
6 months ago
0
Automatic definition of sample id
#157
mhkc
closed
5 months ago
0
Error when removing signature from database
#156
mhkc
closed
6 months ago
0
Resistance variants page crashes on MRSA samples
#155
mhkc
closed
5 months ago
0
Release v0.3.0
#154
mhkc
closed
6 months ago
0
TB: two genes to look at specifically
#153
LordRust
opened
6 months ago
0
filter variant view on bed file
#152
LordRust
opened
6 months ago
0
Add stx and oh typing columns
#151
ryanjameskennedy
closed
6 months ago
0
Added view for analyzing and classifying variants with IGV integration
#150
mhkc
closed
6 months ago
3
148 add serotypefinder output
#149
ryanjameskennedy
closed
6 months ago
0
Add serotypefinder card to sample view
#148
ryanjameskennedy
closed
6 months ago
0
Add export sample to LIMS command
#147
mhkc
closed
6 months ago
1
Fix default compose file
#146
mhkc
closed
7 months ago
0
Fix #144 "Argument too long" from curl
#145
samuell
closed
7 months ago
0
Upload script complains about "Agrument list too long" from curl
#144
samuell
closed
7 months ago
0
Add admin panel
#143
mhkc
closed
7 months ago
10
Add button for deleting samples + some fixes
#142
mhkc
closed
7 months ago
0
Release v0.2.1
#141
mhkc
closed
8 months ago
0
Freeze uvicorn to v0.25.0
#140
mhkc
closed
8 months ago
0
Bonsai API behind proxy is now not working properly
#139
mhkc
closed
8 months ago
0
Various fixes for clustering
#138
mhkc
closed
8 months ago
0
Add button for removing one or multiple samples
#137
mhkc
closed
7 months ago
0
Handle same sample id uploaded multiple times
#136
LordRust
opened
8 months ago
2
Samples with same name
#135
LordRust
closed
8 months ago
1
Docs: Add section on how to access the web interface
#134
samuell
closed
8 months ago
0
Frontend crash with 500 error if redis connection cant be established by the API
#133
mhkc
opened
8 months ago
1
Support request: error configuring network namespace [...] CNI network "bonsai_bonsai-net" not found
#132
samuell
closed
8 months ago
2
Release 0.2.0
#131
mhkc
closed
8 months ago
0
Admin GUI panel
#130
mhkc
closed
7 months ago
0
Add button for removing samples from the database
#129
mhkc
closed
7 months ago
0
Various adaptations for TB analysis
#128
mhkc
closed
8 months ago
0
Updated the API permissions for the "user" role
#127
mhkc
closed
8 months ago
0
125 error creating new user attributeerror database object has no attribute inserted
#126
mhkc
closed
8 months ago
0
Error creating new user - AttributeError: 'Database' object has no attribute 'inserted_id'
#125
mhkc
closed
8 months ago
0
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