EHDEN CatalogueExport issues

EHDEN / CatalogueExport

Exports the data from the OMOP-CDM that is necessary for the EHDEN Database Catalogue

Apache License 2.0

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issues

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717 row number missing partition by stratum_id

#62 MarkoClossOPC opened 4 months ago
0
SQL analyses do not reference to vocabDatabaseSchema

#60 prunk1al closed 10 months ago
0
Error on trying to exclude analyses 110, 117

#59 apopassias opened 11 months ago
0
Export query was not executed successfully

#58 joaofonseca9 closed 1 year ago
1
Use vocab schema parameter in xx30 analyses

#56 MaximMoinat closed 1 year ago
0
xx30 analysis use cdm schema for vocabulary tables

#55 MaximMoinat opened 1 year ago
3
Do not export results on certain (sensitive) concept_id

#54 MaximMoinat opened 1 year ago
0
Maximum of dist analyses exported but not used Database Dashboard

#53 MaximMoinat opened 1 year ago
0
Update README.md with note on rounding

#52 MaximMoinat opened 1 year ago
0
Use of `missing()` makes catalogueExport a little harder to use

#51 actualben opened 2 years ago
3
analysis_id 200: stratum_1 with NULL values

#50 aspedrosa opened 2 years ago
2
Raise warning/error when generated data is not valid

#48 MaximMoinat opened 2 years ago
0
Release 1.0.3

#47 MaximMoinat opened 2 years ago
0
Merge master into dev

#46 MaximMoinat closed 2 years ago
0
Refactorings and general fixes

#45 MaximMoinat closed 2 years ago
0
smallCellCount is applied at two places

#44 MaximMoinat opened 2 years ago
0
Export fails for some subsets of analysIds

#43 MaximMoinat opened 2 years ago
1
Fix counts for dist results

#42 MaximMoinat closed 2 years ago
0
Rounded values always 100 for some analyses

#41 MaximMoinat opened 2 years ago
1
Remove achilles references

#40 MaximMoinat opened 2 years ago
0
Censored Data - Min/Median/Max the same Value for Age

#39 ericaVoss opened 2 years ago
3
Apply small cell count to original count value

#38 MaximMoinat closed 2 years ago
0
Change default value of `smallCellCount`

#37 MaximMoinat opened 2 years ago
0
Removed reference to server

#33 PRijnbeek closed 3 years ago
0
Error in executing CatalogueExport on Postgre CDM 5.3.1

#32 paix30 closed 3 years ago
5
Bug Fixes

#31 PRijnbeek closed 3 years ago
0
Incorrect Syntax Near ')'

#30 ericaVoss closed 3 years ago
2
Error in scan (file = file, ... : line X did not have 6 elements

#29 scossin closed 3 years ago
3
java.sql.SQLSyntaxErrorException: ORA-00955: name is already used by an existing object - dropAllScratchTables

#28 scossin closed 3 years ago
3
errorReportSql.txt file: intermediate errors are overwritten

#27 scossin closed 3 years ago
2
add ; at the end of SQL queries to translate correctly templates to O…

#26 scossin closed 3 years ago
0
SQLSyntaxErrorException: ORA-00905: missing keyword

#25 scossin closed 3 years ago
2
org.postgresql.util.PSQLException: ERROR: relation "results.catalogue_results" does not exist

#24 filipmaljkovic closed 3 years ago
11
Fix bug sourceName <- .getSourceName

#23 scossin closed 3 years ago
0
.getSourceName called but its result is not assigned

#21 scossin closed 3 years ago
3
Fix java.sql.SQLException: Invalid SQL type: sqlKind = UNINITIALIZED

#20 scossin closed 3 years ago
0
java.sql.SQLException: Invalid SQL type: sqlKind = UNINITIALIZED

#19 scossin closed 3 years ago
2
vocabDatabaseSchema parameter not passed to function .getAnalysisSql()

#18 larshalvorsen closed 3 years ago
0
validateSchema option causes error

#17 larshalvorsen closed 3 years ago
1
Remove all queries that are not used.

#11 PRijnbeek closed 3 years ago
0
Add total duration of the run to the log

#10 PRijnbeek closed 3 years ago
1
Enforce that all the fields needed for the upload are available

#9 PRijnbeek closed 3 years ago
0
Aggregated version of code counts

#8 PRijnbeek closed 3 years ago
0
Add option to subset the queries run by the data partner

#7 PRijnbeek closed 3 years ago
1
Change the concept count queries to power of >100 , > 1000 etc

#6 PRijnbeek closed 3 years ago
1
Add queries for the distributions

#5 PRijnbeek closed 3 years ago
0
Add the following queries

#4 PRijnbeek closed 3 years ago
2
Add timestamp to output file name

#3 PRijnbeek closed 3 years ago
1
Add option to copy over the results from achilles and only run the additional queries.

#2 PRijnbeek closed 3 years ago
1
Get vocabulary version from the vocabulary table

#1 PRijnbeek closed 3 years ago
1