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EddyRivasLab
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easel
Sequence analysis library used by Eddy/Rivas lab code
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Optimizing esl-translate for genomes where alternative start sites and/or unusual codon usage is common?
#77
000generic
opened
4 months ago
3
esl-shuffle silently fails to shuffle large sequences
#76
rmhubley
opened
4 months ago
0
Fix faulty `xr_tag` allocation in `esl_sq_Copy`
#75
althonos
closed
6 months ago
1
fix typos
#74
mr-c
closed
11 months ago
1
propogate CPPFLAGS
#73
mr-c
closed
11 months ago
1
HMMER-make check fail
#72
VimaxXAAS
closed
12 months ago
11
CT to WUSS format convertion
#71
mkazanov
closed
1 year ago
3
Additions to support hmmsearcht PR in HMMER
#70
traviswheeler
closed
1 year ago
1
A cryptic error message: "external sort of primary keys failed"
#69
Khalimat
closed
1 year ago
4
`esl_sq_Copy` doesn't copy `tax_id` attribute
#68
valentynbez
closed
1 year ago
2
primary keys not unique: 'AABF01000026.1/2165-2294' occurs more than once
#67
arslan9732
closed
1 year ago
10
Bug fix; adds boundary check for ascii->buf in skip_whitespace()
#66
nawrockie
closed
1 year ago
3
Error in extracting the hmmsearch hits by esl-sfetch -f
#65
GokilavaniThangavel
closed
1 year ago
1
issue while installing HMMER
#64
mohankrishnas777
closed
1 year ago
2
algs needed for new profmark
#63
spetti
closed
2 years ago
1
Add some compatibility code for compiling with MinGW
#62
althonos
closed
2 years ago
0
Fix inconsistent `esl_sqfile_GuessAlphabet` behaviour on file with empty sequences
#61
althonos
closed
2 years ago
1
Fix inconsistent `esl_sqfile_GuessAlphabet` behaviour on file with empty sequences
#60
althonos
closed
2 years ago
0
Use intrinsic for `esl_sse_select_ps` if compiling for SSE4
#59
althonos
closed
3 years ago
0
esl_mixdchlet-utest fails when compiled with --enable-debugging=3
#58
npcarter
closed
3 years ago
2
Add horizontal sum of float32x4 NEON vector
#57
althonos
closed
3 years ago
7
Intermittent crash during Stockholm MSA Read (with possible fix)
#56
andycowie
closed
3 years ago
2
Fix unitialized `abc` pointer in `ESL_SQ` struct
#55
althonos
closed
3 years ago
1
Independent set algorithms for benchmarking splitting algorithms
#54
spetti
closed
2 years ago
1
Set tmp directory for esl-sfetch
#53
arglog
closed
3 years ago
2
Fix hmmer make check after configure --with-gsl
#52
kiwiroy
closed
3 years ago
1
Is eslREADBUFSIZE = 4096 optimal?
#51
Augustin-Zidek
closed
3 years ago
3
How to cite miniapps
#50
ms-gx
closed
4 years ago
1
HMMER esl-fetch corrupt coords
#49
3719left
closed
3 years ago
0
Fix ReadBlock()'s handling of "//" delimiter in embl files
#48
traviswheeler
closed
3 years ago
0
esl_sqio_ascii rare bug: final record line longer than all previous does not invalidate fast subseq retrieval
#47
nawrockie
closed
4 years ago
2
esl_sqio_ReadBlock max init window flag
#46
nawrockie
closed
4 years ago
0
Enforces if(foo) before free(foo) in esl _Destroy() functions
#45
nawrockie
closed
4 years ago
2
Goes over all _Destroy() functions and enforces convention that if(foo) is called before free(foo)
#44
nawrockie
closed
4 years ago
0
Enable position independent code compilation, via --enable-pic configure option
#43
nawrockie
closed
4 years ago
0
esl-reformat mixed gaps error
#42
marceloqla
closed
5 years ago
1
esl_fprintf and similar functions
#41
horta
closed
3 years ago
1
Read-only go for DisplayHelp
#40
horta
closed
5 years ago
0
const buff
#39
horta
closed
5 years ago
0
Not allowed to change string on esl_[banner|usage]
#38
horta
closed
5 years ago
0
alphabet dump
#37
horta
closed
5 years ago
2
Markdown documentation
#36
horta
closed
5 years ago
1
Code format
#35
horta
closed
5 years ago
3
Dumping functions
#34
horta
closed
5 years ago
1
Information for developers - thanks to @npcarter
#33
horta
closed
5 years ago
2
Fix leak on test
#32
horta
closed
5 years ago
1
Hopefully simpler ppc32 and macos test
#31
horta
closed
5 years ago
4
PPC fix, IEEE comparison check, isnanf check, travis test/badge
#30
horta
closed
5 years ago
6
Prepend sequence index if names non-unique in aligned fasta format
#29
potter-s
opened
5 years ago
0
Errors when compiling: ‘_mm_max_epi8’: target specific option mismatch
#28
bioinformatist
closed
5 years ago
5
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