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HumanCellAtlas
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secondary-analysis
Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform
https://pipelines.data.humancellatlas.org/ui/
BSD 3-Clause "New" or "Revised" License
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Delete 1k-bundle-query.json
#838
samanehsan
closed
4 years ago
0
Validate HCA SS2 pipeline for single-end read samples
#837
kbergin
closed
4 years ago
4
Validate HCA SS2 pipeline for Fluidigm samples
#836
kbergin
closed
4 years ago
13
Add the script for debugging inconsistent bundle lists.
#835
rexwangcc
closed
4 years ago
2
Update the Optimus mouse data test to use the current testing style
#834
kbergin
opened
4 years ago
0
Create Changelog md for Optimus Pipeline
#833
kbergin
closed
4 years ago
1
Add new content to Ss2 documentation
#832
kbergin
closed
4 years ago
0
[SPIKE] Optimus based snRNA-Seq pipeline for 10X V2/V3 chemistry
#831
kbergin
closed
4 years ago
2
Update Optimus Documentation to reflect mouse and new output changes.
#830
kbergin
closed
4 years ago
5
Clean up of Secondary Analysis Repo
#829
kbergin
closed
4 years ago
2
Fix and Update HCA Grafana dashboard for analysis service
#828
kbergin
closed
4 years ago
6
Update adapters for Optimus to reflect the fact that the chemistry of the data is V2
#827
kbergin
closed
4 years ago
11
Analyze mouse 10x v2 dataset: Mouse Endoderm Project
#826
jychien
opened
4 years ago
5
Add a clean-up script for operation purposes.
#825
rexwangcc
closed
4 years ago
0
Re-organize the whole repo to make it reasonable
#824
rexwangcc
closed
4 years ago
0
testInfra
#823
kbergin
closed
4 years ago
0
removed job manager deploy files
#822
rsasch
closed
4 years ago
1
Migrate lira's subscription service over to JMESPath
#821
maniarathi
opened
4 years ago
0
Wipe all data from spatio-temporal kidney project
#820
jahilton
closed
4 years ago
4
Analysis mouse SS2 dataset: Tabula Muris
#819
jychien
opened
4 years ago
1
Add force label for batch notify
#818
samanehsan
closed
4 years ago
0
Analyze mouse 10x and SS2 mouse data: scRNAseqSystemicComparison
#817
jychien
closed
4 years ago
1
Analyze mouse 10x v2 dataset: HumanColonicMesenchymeIBD
#816
jychien
closed
4 years ago
6
Analyze mouse SS2 dataset: Mouse Melanoma
#815
jychien
opened
4 years ago
1
Update the test so it can find the adapters in the new location.
#814
rexwangcc
closed
4 years ago
0
Update the secondary analysis repo for the adapters migration
#813
rexwangcc
closed
4 years ago
0
QA comment.
#812
rexwangcc
closed
4 years ago
0
Analyze human 10X V2 dataset: Reprogrammed_Dendritic_Cells
#811
jlzamanian
closed
4 years ago
1
Analyze 10x v2 SingleCellLiverLandscape Dataset
#810
jychien
closed
4 years ago
3
Analyze 10x 1M Neurons mouse dataset with Optimus in production
#809
kbergin
opened
4 years ago
2
Update Notifier
#808
samanehsan
closed
4 years ago
0
Improve manually starting HCA workflows
#807
kbergin
closed
4 years ago
1
Refactor AttachBarcodes
#806
kbergin
opened
5 years ago
0
Refactor Optimus Parameterization with respect to input chemistry
#805
kbergin
closed
4 years ago
5
Make a dataset for PR validation of Optimus V3
#804
kbergin
closed
4 years ago
3
Check that the Optimus V3 is comparable to the outputs obtained by Cellranger
#803
kbergin
closed
4 years ago
9
Add PR tests for Optimus 10X scRNAseq V3 path in the pipeline
#802
kbergin
closed
4 years ago
1
AttachBarcodes V3 Code Path is Tested
#801
kbergin
closed
4 years ago
7
Update 10x subscription query
#800
zperova
closed
4 years ago
10
Remediate High urllib3 vulnerability
#799
kbergin
closed
4 years ago
1
Remediate High Jinja2 vulnerability
#798
kbergin
closed
4 years ago
1
Remove duplicate code/scripts SS2 and Optimus for both human and mouse reference and pr.
#797
kbergin
closed
4 years ago
1
Analyze 10x v2 Human Tissue TCell Dataset
#796
kbergin
closed
5 years ago
3
Analyze 10x v2 retina dataset
#795
kbergin
closed
5 years ago
4
Fix mintegration tests
#794
samanehsan
closed
5 years ago
0
Update user facing Mouse documentation
#793
kbergin
closed
4 years ago
0
Run the AUDR hash label backfill
#792
kbergin
closed
4 years ago
5
SPIKE: Investigate what needs to be done to place a beta metadata tag on a beta pipeline
#791
kbergin
closed
4 years ago
9
Polymorphic Gene Regions
#790
kbergin
opened
5 years ago
0
Mouse SS2 Test / Testing strategy
#789
kbergin
closed
4 years ago
0
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