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InstituteforDiseaseModeling
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malaria-model_validation
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Pandas KeyError in run_generate_validation_comparisons_site.py
#64
krosenfeld-IDM
opened
1 year ago
1
Analyzer workitems failing (ndiop_1993 and chonyi_1999)
#63
krosenfeld-IDM
opened
1 year ago
1
use double brackets to select columns
#62
krosenfeld-IDM
closed
1 year ago
1
Analyzer workitem (sotuba_1999) failing
#61
krosenfeld-IDM
opened
1 year ago
1
release v1.2.0
#60
YeChen-IDM
closed
1 year ago
1
Change for #51, #56 and #57
#59
YeChen-IDM
closed
1 year ago
3
Consider using wildcards in snakemake rules for site names and run numbers
#58
YeChen-IDM
opened
1 year ago
0
organize the output folder with Eradication version
#57
YeChen-IDM
closed
1 year ago
1
Better error handling when site result is not available or certain image file is not available.
#56
YeChen-IDM
closed
1 year ago
2
Considering support running our workflow as a package
#55
YeChen-IDM
opened
1 year ago
0
reference path issues when you have ##Regular Installation
#54
stitova-idm
opened
1 year ago
1
Modular structure
#53
YeChen-IDM
closed
1 year ago
0
speed up plotting script for site navrongo_2000
#52
YeChen-IDM
closed
1 year ago
4
re-running snakemake workflow in Windows may cause issue due to Metadata can't be created
#51
YeChen-IDM
closed
1 year ago
1
plotting script error: ModuleNotFoundError: No module named 'matplotlib._contour'
#50
YeChen-IDM
closed
1 year ago
1
Installation failed due to packaging conflict with idmtools
#49
YeChen-IDM
closed
1 year ago
3
Release v1.1.0
#48
YeChen-IDM
closed
1 year ago
1
Snakemake plotting and reporting scripts integration; Update to the latest Eradication on M-O; update to version v1.1.0
#47
YeChen-IDM
closed
1 year ago
0
installing bokeh with pip takes couple minutes
#46
YeChen-IDM
closed
1 year ago
1
Python plotting scripts updates
#45
YeChen-IDM
closed
1 year ago
0
Update requirements.txt: use scikit-learn instead of sklearn
#44
YeChen-IDM
closed
1 year ago
0
Add a script to retrieve comps ids from a suite ID
#43
YeChen-IDM
closed
1 year ago
3
Add modular structure so that users can specify which subset of validation comparisons they want to see run (e.g., include vectors? include interventions?)
#42
MAmbrose-IDM
closed
1 year ago
2
Integrate Python plots into the generate report/pdf script.
#41
YeChen-IDM
closed
1 year ago
1
Update 2 failed tests. fix for #38
#40
YeChen-IDM
closed
1 year ago
2
Update Python plotting script according to R script fix in #19, commit 1713364
#39
YeChen-IDM
closed
2 years ago
0
2 tests failed due to Emodpy-Malaria change: test_submit_sim_campaign and test_submit_sim_config
#38
YeChen-IDM
closed
1 year ago
1
Test failed with ValueError: You set param Infectious_Period_Distribution but it was disabled and is not being used.
#37
YeChen-IDM
closed
1 year ago
2
Add documentation
#36
MAmbrose-IDM
opened
2 years ago
0
Plotting
#35
YeChen-IDM
closed
1 year ago
1
Consider creating Jenkins jobs to run the validation workflow automatically
#34
YeChen-IDM
opened
2 years ago
0
Consider deliver a docker image/definition file for runtime environment
#33
YeChen-IDM
opened
2 years ago
0
Add plotting and reporting steps into snakemake pipeline(Pending)
#32
YeChen-IDM
closed
1 year ago
1
Write down Eradication version and Emodpy-malaria version in final report
#31
YeChen-IDM
closed
1 year ago
1
Consider releasing our package to idm-pypi-production server
#30
YeChen-IDM
opened
2 years ago
0
Download work item replacement(pending)
#29
YeChen-IDM
opened
2 years ago
1
Add a script to receive comps ids from a suite ID
#28
YeChen-IDM
closed
1 year ago
3
Installation error about conflict dependencies on Pandas with idmtools and datar
#27
YeChen-IDM
closed
2 years ago
1
Make python ggplot images as pretty as the R ggplot2 image.
#26
YeChen-IDM
closed
1 year ago
0
Add visual validation comparisons with sweeps of simulated site characteristics
#25
MAmbrose-IDM
opened
2 years ago
0
Find equivalents in Python for multiple R functions and test
#24
YeChen-IDM
closed
1 year ago
1
Add comparison pass/no-pass thresholds
#23
MAmbrose-IDM
opened
2 years ago
0
Update Python plotting script according to R script fix in #19
#22
YeChen-IDM
closed
1 year ago
1
R script error with benchmark data(parasite densities max boundary problems)
#21
YeChen-IDM
closed
2 years ago
2
Consider to save Comps entity ID as 8-4-4-4-12 format
#20
YeChen-IDM
closed
1 year ago
1
Fix problem with age bins and use true parasite densities to avoid max boundary problems
#19
MAmbrose-IDM
closed
2 years ago
3
v1.0.0
#18
YeChen-IDM
closed
2 years ago
4
Translate R plotting scripts into Python and add get_version.py
#17
YeChen-IDM
closed
1 year ago
4
reorganize and standardize plotting and quantitative comparison content
#16
MAmbrose-IDM
closed
2 years ago
0
Python plotting script + misc updates
#15
YeChen-IDM
closed
2 years ago
0
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