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JRaviLab
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MolEvolvR
An R Package for characterizing proteins using molecular evolution and phylogeny
https://jravilab.github.io/MolEvolvR/
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Refactor Example Data: R-CMD check error #118
#120
Joiejoie1
opened
2 weeks ago
0
removeTails: `domains_keep` undefined
#119
the-mayer
opened
3 weeks ago
2
Refactor Example Data: R-CMD check error
#118
the-mayer
opened
3 weeks ago
5
Fixes Issue #116
#117
Klangina
closed
3 weeks ago
0
R-CMD Check: summarizeDomArch, summarizeDomArch_ByLineage, summarizeGenContext, summarizeGenContext_ByDomArchLineage, summarizeGenContext_ByLineage
#116
Klangina
closed
3 weeks ago
0
Resolution to Issue 114
#115
Klangina
closed
3 weeks ago
1
R-CMD Check : selectLongestDuplicate, plotEstimatedWallTimes, removeTails, condenseRepeatedDomains, plotStackedLineage
#114
Klangina
closed
3 weeks ago
2
Tree.R : R-CMD check
#113
Klangina
opened
4 weeks ago
1
Function dependency inventory
#112
awasyn
opened
4 weeks ago
0
WIP: Case study report automation
#111
awasyn
opened
1 month ago
1
Issue 109 a:
#110
Klangina
opened
1 month ago
1
[FEAT] Protein AccNum mapping
#109
Klangina
opened
1 month ago
3
Fixes Issue #94 -
#108
Klangina
opened
1 month ago
3
Restructured project: Moved files into case_studies/CARD, removed red…
#107
Cateline
opened
1 month ago
4
Made changes in assign_job_queue.R, cleanup.R, lineage.R, msa.R, tree.R
#106
SunSummoner
opened
1 month ago
0
Failed devtools::check()
#105
jananiravi
closed
1 month ago
1
Fixes Phase 1 of Issue #27
#103
Cateline
closed
1 month ago
0
[FEAT] Generate case study report `Rmd`/`Qmd`
#102
jananiravi
opened
1 month ago
0
Refactored function names in msa.R | networks_domarch.R | networks_gencontext.R
#101
teddyCodex
closed
1 month ago
0
Feature/card data processing
#100
Cateline
closed
1 month ago
0
Refactor function names in R/blastWrapper.R
#99
teddyCodex
closed
1 month ago
0
Automate case study creation
#98
Cateline
closed
1 month ago
1
Add function documentation
#97
awasyn
closed
3 weeks ago
1
Refactor internal functions LevelReduction and GetKingdom
#96
Joiejoie1
closed
3 weeks ago
1
Function names rename for R/combine_analysis.R, R/combine_files.R, R/create_lineage_lookup.R, R/assign_job_queue.R
#95
Seyi007
closed
1 month ago
1
[DOC] convertFA2Tree
#94
the-mayer
opened
1 month ago
2
PspA figure implementation
#93
falquaddoomi
opened
1 month ago
1
DciA figures implementation
#92
falquaddoomi
opened
1 month ago
0
InlP figures implementation
#91
falquaddoomi
opened
1 month ago
7
[FEAT] Fix, Implement PspA Figure
#90
falquaddoomi
opened
1 month ago
0
[FEAT] Fix, Implement DciA Figure
#89
falquaddoomi
opened
1 month ago
2
[FEAT] Fix, Implement InlP Figure
#88
falquaddoomi
opened
1 month ago
13
refactor function names in R/pre-msa-tree and R/reverse-operons.R
#87
teddyCodex
closed
1 month ago
0
Refactored function names in R/pre-msa-tree.R and R/reverse_operons.R
#86
teddyCodex
closed
1 month ago
0
Refactor: Externalize .LevelReduction and .GetKingdom for global use
#85
teddyCodex
closed
3 weeks ago
3
add unit tests to CHANGED-pre-msa-tree
#84
awasyn
opened
1 month ago
0
Refactored function names in R/ipr2viz.R
#83
teddyCodex
closed
1 month ago
0
Eskape case studies
#82
Cateline
closed
1 month ago
2
Refactored function names in R/job_status_emails.R
#81
teddyCodex
closed
1 month ago
0
Refactor internal functions to be defined outside of plot functions
#80
the-mayer
closed
3 weeks ago
3
Refactored function names in R/summarize.R
#79
teddyCodex
closed
1 month ago
0
Tagging duplicate functions for later review.
#78
the-mayer
opened
1 month ago
3
add unit tests to cleanup.R
#77
awasyn
opened
1 month ago
0
Added error handling to multiple functions in R/assign_job_queue.R, R/blastWrappers.R
#76
Seyi007
closed
3 weeks ago
7
add unit tests to fa2domain
#75
awasyn
opened
1 month ago
0
add input checks in pre-msa-tree
#74
awasyn
closed
3 weeks ago
0
Rename and added a robust error handling functionality to the R/assign_job_queue.R file functions
#73
Seyi007
closed
1 month ago
0
add error handling in reverse_operons
#72
awasyn
closed
3 weeks ago
0
add error handling to summarize.R
#71
awasyn
closed
3 weeks ago
0
add error handling in tree.R
#70
awasyn
closed
3 weeks ago
0
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