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JiekaiLab
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scTE
MIT License
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ValueError: X needs to be 2-dimensional, not 1-dimensional.
#46
ruocensong
opened
1 year ago
2
Change `Countexpression()` call to allow output to a directory
#45
alecpnkw
closed
1 year ago
0
scATAC:TypeError: align() got an unexpected keyword argument 'CB'
#44
momo-FLY
opened
1 year ago
2
gzip: out_scTEtmp/o1/out.bed.gz: invalid compressed data--format violated
#43
alexlenail
opened
1 year ago
0
Add flexibility to handle other CB/UMI tags, convert bstrings to fstrings
#42
mikecuoco
closed
1 year ago
0
IndexError: list index out of range
#41
ShambaMondal
opened
1 year ago
5
ImportError: cannot import name 'Literal'
#40
alfonsosaera
opened
1 year ago
1
New release version required
#39
jayramr
opened
1 year ago
1
Issues post-processing out.h5ad file from custom genome
#38
BrunoGuillotin
opened
2 years ago
0
Error using bam file from CellRanger
#37
BrunoGuillotin
opened
2 years ago
4
Error when running scATAC data
#36
ApolloWuu
opened
2 years ago
1
checkCBUMI may not work as expected
#35
xuzhougeng
opened
2 years ago
1
[Bug] Parameter of Readanno in scTEATAC is not correct
#34
xuzhougeng
opened
2 years ago
0
scTE freezes after beginning BAM file processing
#33
martinkinisu
opened
2 years ago
4
KeyError: 'M'
#32
Chris-lang478
opened
2 years ago
0
custom transgenes
#31
JBreunig
opened
2 years ago
1
How to modify the raw fastq file from MARS-seq as in the 10x scRNA-seq format ?
#30
Chris-lang478
opened
2 years ago
2
Error when running scTEATAC: 'genome required'
#29
mathosi
opened
2 years ago
3
TE_genes_id.mm10.txt?
#28
toddey
opened
2 years ago
1
ERROR on 10* single cell bam
#27
topafzd
opened
2 years ago
3
Stuck while quantifying!
#26
me37uday
opened
2 years ago
16
broken pipe while processing
#25
dawe
closed
2 years ago
1
only TE analysis
#24
JihedC
closed
2 years ago
1
TE families and classes
#23
JihedC
closed
2 years ago
3
Issues building an index for a custom genome (Turquoise killifish)
#22
BenayounLaboratory
opened
2 years ago
13
got less differential expressed gene
#21
xyn0813
opened
2 years ago
3
scTE building customs reference index ERROR !
#20
akui113
closed
2 years ago
2
error when run on test.bam
#19
helianthuszhu
closed
2 years ago
2
limit of 10000 cells?
#18
99fatimagr
closed
2 years ago
1
chromosome number must be consistent when using scTE ?
#17
akui113
opened
3 years ago
2
Work with Seurat and bam files merge
#16
Counts-Xin
opened
3 years ago
5
Error Creating Custom reference for genome
#15
ivanferrreira
opened
3 years ago
5
TE sequences for motif enrichment
#14
laijen000
opened
3 years ago
0
incomplete tmp folder
#13
leeyoyohku
opened
3 years ago
0
STAR solo include the read 'CR:Z' or 'UR:Z' tags
#12
JihedC
closed
3 years ago
3
Error when running scTEATAC
#11
cnk113
opened
3 years ago
11
scTE analysis Bulk RNA-seq data
#10
akui113
closed
2 years ago
1
args.out <---> filename
#9
melonheader
closed
3 years ago
1
args.out <-> outname problem
#8
melonheader
closed
3 years ago
0
reference hg19
#7
xyn0813
closed
2 years ago
3
sh: samtools 未找到命令
#6
xyn0813
closed
3 years ago
4
Failure to parse cell barcodes from bam files
#5
kevingmonahan
closed
3 years ago
6
scTE: error: argument -CB: invalid choice: 'CB' (choose from 'True', 'False')
#4
lexie-lee
opened
3 years ago
16
Custom reference for non-human, non-mouse genome
#3
hswhitbeck
closed
2 years ago
12
scTE does not finish, stuck on Fetching from annotation file
#2
HectorRDB
closed
3 years ago
2
How to use scTE to analyze the single cell datasets of zebrafish?
#1
xiaozhongshen
closed
3 years ago
8
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