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JiekaiLab
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scTE
MIT License
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The number of cells is not consistent with the result of cellranger
#96
Yuanqingq
opened
2 weeks ago
1
"IndexError: list index out of range" when using scTE_build
#95
BitterWood
closed
3 weeks ago
5
RNA-seq data processing
#94
l1y1y
opened
1 month ago
5
scTEATAC error
#93
cyyisbest
opened
1 month ago
0
Questions regarding preprocessing and integration of scTE with other tools
#92
zerostwo
opened
1 month ago
1
How touse output from scTE pipeline to generate a Seurat object
#91
OwenHoare1989
opened
1 month ago
0
Why do I encounter this error when opening scTE?
#90
l1y1y
opened
1 month ago
6
Requires python >= 3.9, not 3.6
#89
dannyconrad
opened
2 months ago
12
filterCRs IndexError:list index out of range
#88
bio-xtt
opened
2 months ago
7
gene expression from scTE were not consistent with cellranger
#87
baishengjun
opened
2 months ago
2
Master
#86
carmarpe
closed
2 months ago
0
ValueError: Invalid Mode: uR
#85
Kiliankleemann
opened
2 months ago
3
How do I find which ones are TEs and which are genes?
#84
gdolsten
opened
2 months ago
1
Output matrix with a series of numbers in gene/TE names
#83
synnimeng
closed
1 month ago
4
Broad cell type clustering from TE counts alone
#82
sabrinacamp2
closed
3 months ago
1
Wrong example of ATAC
#81
dantingz
opened
4 months ago
1
Warning message Query V350183366L1C005R01400986149/1 is marked as paired, but its mate does not occur next to it in your BAM file. Skipping.
#80
yc508
opened
4 months ago
2
IndexError: list index out of range
#79
Kiliankleemann
opened
6 months ago
4
How scTE infers TEs from scRNA-seq
#78
swainasish
closed
4 months ago
0
scTE exon/UTR TE counts inclusion
#77
bosscrab1
opened
7 months ago
1
running for a while but not sure what the progress is
#76
umaarora
opened
7 months ago
1
For the same bam file, why is there a big difference in the total number of umi tools quantities and scTE quantities?
#75
SMU-TK-2022
closed
8 months ago
0
running scTE on Parse-seq data
#74
mellyS
opened
9 months ago
0
depracation waring and filenotfounderror
#73
Kiliankleemann
opened
9 months ago
0
Can scTE handle plate-based single cell sequencing data, like Smart-seq
#72
Guangsheng357
opened
10 months ago
0
Only detecting 3 cells expressing at least 200 genes
#71
t1nnenissen
opened
10 months ago
2
no hdf5 out and file not found error
#70
liuyuchenlab
opened
11 months ago
6
Details about running scTEATAC in 10X format
#69
zys-BIG
closed
11 months ago
3
Too few genes when applying scTE on scATAC-seq data
#68
Wei-BioMath
closed
11 months ago
1
Wired Gene name in output h5ad file
#67
XiaoyuZhan520
opened
11 months ago
1
'Calculating expression' getting killed
#66
noranekonobokkusu
opened
11 months ago
1
scTE cannot run due to a lack of "="
#65
rpisalive
opened
11 months ago
2
Difference between two version of hg38.exclusive.idx
#64
XiaoyuZhan520
opened
1 year ago
1
The input file unassigned_alignments.bam has no cell barcodes information
#63
tinnenissen
opened
1 year ago
2
Coordinates of TE duplicates (dup1 ... dupn)
#62
cdelacalle
opened
1 year ago
0
scTEATAC
#61
zhaomengmengxiaokeai
opened
1 year ago
1
scTE returns empty csv files
#60
CHoeltermann
opened
1 year ago
4
Suggestion - more inclusive tags for barcodes
#59
CHoeltermann
opened
1 year ago
1
error kindly help
#58
amitpande74
opened
1 year ago
2
how to understand the output file ?
#57
lxlovelxc
closed
1 year ago
0
scTE: TypeError: no supported conversion for types: (dtype('<U4'),)
#56
chaigsh
opened
1 year ago
11
"outSAMmultNmax" STAR argument for multimapping reads?
#55
rargelaguet
opened
1 year ago
1
Remove "U" mode from open()
#54
olivertam
closed
1 year ago
2
How to make hg38.exclusive.idx
#53
TheBorgy
opened
1 year ago
1
TE file and species issue
#52
zuodabin
opened
1 year ago
2
Not getting significant read counts
#51
A1aNNN
opened
1 year ago
3
Hidden Dependency on SAMtools and Question Regarding STARsolo Runs
#50
ColeWunderlich
opened
1 year ago
2
Unable to recognize barcode information
#49
A1aNNN
closed
1 year ago
0
Detect 0 cells expressed at least 200 genes, results output to out.csv
#48
ruocensong
opened
1 year ago
3
imposible to read output file
#47
JavieraVillar
opened
1 year ago
2
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