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JudeWells
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chainsaw
MIT License
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Allow for chain identifiers different from A
#34
JoanaMPereira
opened
1 month ago
1
Reproducibility: Datasets required
#33
FoxHarley
closed
1 month ago
5
Chainsaw Software Distribution License
#32
jlotthammer
closed
5 months ago
1
GH030: ensure residue index is sequential
#31
sillitoe
closed
9 months ago
0
Residues with non-sequential index
#30
sillitoe
closed
9 months ago
0
Add option to remove low PLDDT residues from domain assignments on AlphaFold structures
#29
JudeWells
opened
9 months ago
2
GH027: output residue label numbering
#28
sillitoe
closed
9 months ago
0
Output chopping by residue labels (as well as sequential numbering)
#27
sillitoe
closed
9 months ago
0
remove chain param from visualise function
#26
JudeWells
closed
10 months ago
0
Featurizer bug fix
#25
JudeWells
closed
10 months ago
0
GH023: add chain specifier
#24
sillitoe
closed
10 months ago
1
Add chain specifier
#23
bordin89
closed
8 months ago
0
Add setup.py or equivalent to enable proper packaging and simplify interactive usage
#22
alex-hh
opened
10 months ago
0
remove chain kwarg from get_model_structure call
#21
alex-hh
closed
10 months ago
3
#19 submit script loop around archive files
#20
sillitoe
closed
11 months ago
0
Submit script should loop around archive files
#19
sillitoe
closed
11 months ago
0
Remove hard-coded python environment variable in renum_pdb_file()
#18
JudeWells
closed
11 months ago
6
Change zero-indexed output behaviour
#17
JudeWells
closed
11 months ago
1
Cluster warning
#16
alex-hh
closed
5 months ago
0
Zip extraction performance
#15
alex-hh
closed
1 year ago
4
Add default submission args to qsub scripts
#14
alex-hh
closed
10 months ago
0
Fully vectorised distance calculation
#13
alex-hh
closed
1 year ago
1
Nb
#12
alex-hh
closed
1 year ago
0
should output and save_dir arguments agree / share directory?
#11
alex-hh
opened
1 year ago
0
[feature] Writing results to file in chunks + allow append to existing
#10
sillitoe
closed
1 year ago
0
Add buffered CSV writer to avoid issues on HPC
#9
sillitoe
closed
1 year ago
0
Mod ss
#8
JudeWells
closed
1 year ago
0
Refactor inference_time_create_features() to be method of PairwisePredictor object
#7
JudeWells
opened
1 year ago
0
optimise feature creation: especially function: calc_dist_matrix
#6
JudeWells
closed
1 year ago
0
Add submit scripts
#5
sillitoe
closed
1 year ago
0
Fix: change output to the agreed format
#4
sillitoe
closed
1 year ago
1
check file suffix when using structure directory
#3
sillitoe
closed
1 year ago
0
Post proc
#2
JudeWells
closed
1 year ago
0
Add tests, minor refactors
#1
sillitoe
closed
1 year ago
0