KarrLab datanator_rest_api issues

KarrLab / datanator_rest_api

A OAS3 compliant REST API for the Datanator integrated database

MIT License

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Bump py from 1.8.1 to 1.10.0

#135 dependabot[bot] opened 1 year ago
0
Metabolite meta endpoints no longer return data

#134 jonrkarr closed 3 years ago
5
Bug with taxonomic distance calculation in /proteins/proximity_abundance

#133 jonrkarr closed 3 years ago
6
Enable CORS for /metabolites/meta/

#132 jonrkarr closed 3 years ago
4
API not returning modifications for rRNA

#131 jonrkarr closed 3 years ago
2
Non-coding RNA search results should be aggregated

#130 jonrkarr closed 3 years ago
5
Gene search results should be grouped by OrthoDB id

#129 jonrkarr closed 3 years ago
6
Protein metadata fails for individual UniProt ids

#128 jonrkarr closed 3 years ago
4
Handle rRNA and tRNA alongside OrthoDB groups

#127 jonrkarr closed 3 years ago
12
Error searching for ortholog groups by UniProt id

#126 jonrkarr closed 3 years ago
6
How can I retrieve metadata about an OrthoDB group (i.e. name)?

#125 jonrkarr closed 3 years ago
4
How can I retrieve reactions associated with an OrthoDB group?

#124 jonrkarr closed 3 years ago
7
Add OrthoDB ids for enzymes

#123 jonrkarr closed 3 years ago
3
Some OrthoDB groups are missing names

#122 jonrkarr closed 3 years ago
3
canon_rank_distance_by_name should return 404 error for taxa that don't exist

#121 jonrkarr closed 4 years ago
1
"Record request exceeds limit" failures should return a 500 error

#120 jonrkarr closed 4 years ago
3
Sort taxon search results by amount of data (e.g., prioritize Homo sapiens, Escherichia coli, etc.)

#119 jonrkarr opened 4 years ago
0
Substrate/product ids missing from some reaction search results

#118 jonrkarr closed 4 years ago
3
Taxon distance endpoint occasionally fails

#117 jonrkarr opened 4 years ago
0
Some substrate/products are missing hashes

#116 jonrkarr closed 4 years ago
2
Log and analyze HTTP 500 errors

#115 jonrkarr closed 4 years ago
8
Kinetics endpoint fails for some reactions when an organism is included

#114 jonrkarr closed 4 years ago
1
RNA half life endpoint throws errors for some UniProt ids

#113 jonrkarr closed 4 years ago
1
Protein abundance endpoint sometimes returns errors when there's no relevant data

#112 jonrkarr closed 4 years ago
1
Kinetics endpoint is failing on the API, but not on the test API

#111 jonrkarr closed 4 years ago
4
Replace `NaN` in protein metadata

#110 jonrkarr closed 4 years ago
8
Protein abundance endpoint is not calculating taxonomic distances

#109 jonrkarr closed 4 years ago
2
Rename `taget` argument to `target` in protein abundance endpoint

#108 jonrkarr closed 4 years ago
2
Use AWS ECS to scale REST API and move away from Heroku

#107 lzy7071 closed 4 years ago
10
Extend protein modifications endpoint to genes identified via individual UniProt ids

#106 jonrkarr closed 4 years ago
4
Extend RNA half-life endpoint to genes identified via individual UniProt ids

#105 jonrkarr closed 4 years ago
2
Kinetics endpoint returns no data when species included

#104 jonrkarr closed 4 years ago
1
Cache results for stats endpoints to speed up performance and increase reliability

#103 lzy7071 opened 4 years ago
0
Get number of SABIO-RK K_i intermittently fails

#102 jonrkarr closed 4 years ago
6
Reactions kinetics endpoint with taxonomic distance calculations is down (500)

#101 jonrkarr closed 4 years ago
3
Add organism name to gene full-text search results for individual genes (e.g., results identified by UniProt ids)

#100 jonrkarr closed 4 years ago
4
Set up two testing envs for circleci

#99 lzy7071 closed 4 years ago
1
Add endpoints that return stats about the new data types

#98 jonrkarr closed 4 years ago
21
Add endpoint that returns the taxonomic distribution of the Datanator

#97 jonrkarr closed 4 years ago
2
Extend related reactions (to a KO group) endpoint to individual UniProt ids

#96 jonrkarr closed 4 years ago
2
/proteins/proximity_abundance/proximity_abundance_kegg/ is not working

#95 yosefdroth closed 4 years ago
1
testapi.datanator.info is down

#94 jonrkarr closed 4 years ago
1
Enable HTTPS for test API (testapi.datanator.info)

#93 jonrkarr closed 4 years ago
1
Github CLI create issue test

#92 lzy7071 closed 4 years ago
1
URLs for some reactions can't be formed because InChi key are missing for some participants;

#91 jonrkarr closed 4 years ago
11
Reaction full text search results include reactions with no data

#90 jonrkarr opened 4 years ago
4
Add option to only return gene full text search results that have data

#89 jonrkarr opened 4 years ago
2
Some RNA half-life queries have 500 errors

#88 jonrkarr closed 4 years ago
1
Some metabolite concentration queries with organisms have 500 errors

#87 jonrkarr closed 4 years ago
1
Add option to metabolite full text search results to only return metabolites with concentration data

#86 jonrkarr opened 4 years ago
2