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Knowledge-Graph-Hub
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kg-idg
A Knowledge Graph to Illuminate the Druggable Genome
https://knowledge-graph-hub.github.io/kg-idg/
BSD 3-Clause "New" or "Revised" License
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Clone multi-indexer and remove multi-indexer files from here
#81
caufieldjh
closed
2 years ago
0
Update download URLs
#80
caufieldjh
closed
2 years ago
1
TCRD source is unavailable
#79
caufieldjh
closed
2 years ago
1
Add pystache to dependencies
#78
caufieldjh
closed
2 years ago
1
Indexer script should be in its own repository
#77
caufieldjh
closed
2 years ago
2
Resolving earlier dependency conflicts
#76
caufieldjh
closed
2 years ago
1
General miscellaneous updates, with a focus on data sources
#75
caufieldjh
closed
2 years ago
2
Fix for STRING node Biolink cats
#74
caufieldjh
closed
2 years ago
1
Update GO-CAMs to be broader
#73
caufieldjh
closed
2 years ago
2
Parse the DrugCentral 'structures' table to get more metadata
#72
caufieldjh
closed
2 years ago
2
Generate SSSOM for drug CURIEs to DrugCentral
#71
caufieldjh
closed
2 years ago
1
Add DrugCentral identifiers; source as edge facet
#70
caufieldjh
closed
2 years ago
1
Ingest DrugCentral identifiers
#69
caufieldjh
closed
2 years ago
1
Temp fix for issue 65
#68
caufieldjh
closed
2 years ago
1
General documentation updates and repo cleanup
#67
caufieldjh
closed
2 years ago
1
Repeatedly try to start database platforms during Jenkins build
#66
caufieldjh
closed
2 years ago
1
uPheno transform yields empty file on Docker but not locally
#65
caufieldjh
opened
2 years ago
7
Human Protein Atlas edges not present in merged KG
#64
caufieldjh
closed
2 years ago
3
Loading mysql db tends to fail
#63
caufieldjh
closed
2 years ago
0
Create HTML index for graph_ml output
#62
caufieldjh
closed
2 years ago
5
Add Sphinx docs
#61
caufieldjh
closed
2 years ago
1
Add upheno2
#60
caufieldjh
closed
2 years ago
1
Remove decompressed raw sources
#59
caufieldjh
closed
2 years ago
1
Fix bug in download_utils
#58
caufieldjh
closed
2 years ago
1
Download step failing on Jenkins
#57
justaddcoffee
closed
2 years ago
3
Transform updates
#56
caufieldjh
closed
2 years ago
2
Restricting TCRD transform WANTED_TABLES to those in use
#55
caufieldjh
closed
2 years ago
1
Adding a NEAT config yaml
#54
caufieldjh
closed
2 years ago
0
Adding more drugcentral content, focusing on edge features
#53
caufieldjh
closed
2 years ago
2
Add further edge features
#52
caufieldjh
closed
2 years ago
1
Upload only compressed raw sources
#51
caufieldjh
closed
2 years ago
0
Reminder PR to merge Jenkins tests back into drug-central-ingests branch
#50
caufieldjh
closed
2 years ago
2
Adding a NEAT config yaml for KG-IDG
#49
caufieldjh
closed
2 years ago
1
Add NEAT to Jenkins
#48
justaddcoffee
closed
2 years ago
6
DrugCentral and TCRD ingests and transforms from MySQL dumps
#47
caufieldjh
closed
2 years ago
2
use Drug Central CURIEs for drugs in KG-IDG
#46
caufieldjh
closed
2 years ago
4
Primary IDs for drugs: use DrugCentral in lieu of CHEBI
#45
caufieldjh
closed
2 years ago
1
Additional value ingests from DrugCentral
#44
caufieldjh
closed
2 years ago
4
Set up an automated ML task to predict drug -> drug target edges
#43
justaddcoffee
opened
2 years ago
3
Add ATC information about drugs from Drug Central
#42
justaddcoffee
closed
2 years ago
4
CURIE prefix and predicate errors
#41
caufieldjh
opened
2 years ago
3
Merged graph name correction
#40
caufieldjh
closed
2 years ago
1
Correct filenames in merge.yaml
#39
caufieldjh
closed
2 years ago
1
A couple fixes related to Koza update
#38
caufieldjh
closed
2 years ago
1
Create more fine-grained STRING ingest based on Koza examples
#37
caufieldjh
closed
2 years ago
4
change nodes and edges file back to "merged-kg_nodes|edges.tsv" (instead of KG-IDG_nodes)
#36
justaddcoffee
closed
2 years ago
0
Do embedding and tSNE plot for each build
#35
caufieldjh
closed
2 years ago
0
Update GOCAMs to be less COVID specific
#34
justaddcoffee
closed
2 years ago
8
Various feature and bugfix updates
#33
caufieldjh
closed
2 years ago
1
Update TCRD source link
#32
caufieldjh
closed
2 years ago
1
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