MD-Anderson-Bioinformatics NG-CHM_GUI_BUILDER issues

MD-Anderson-Bioinformatics / NG-CHM_GUI_BUILDER

Simple graphical builder for Next-Generation Clustered Heat Maps

GNU General Public License v2.0

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issues

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Selecting palette in Covariate Bars portion of Heat Map Display Properties for throwing error.

#74 jmelott closed 4 months ago
1
Update to use newer supported version of tomcat official build.

#73 jmelott closed 1 year ago
1
Update version of Tomcat to supported version.

#72 jmelott closed 1 year ago
0
No "centroid linkage" agglomeration method available for hierarchical clustering

#75 monikaramos opened 1 year ago
1
Release 2.22

#71 bmbroom closed 1 year ago
1
Add capability to load an existing ngchm file in the gui builder similar to how you can import one from the viewer.

#70 jmelott opened 1 year ago
0
Putting = instead of - in front of value in breakpoint causes error in console if try to apply palette, but no user error displayed.

#69 jmelott opened 1 year ago
0
Error generated when opening new panel with map containing ScatterPlot and some other features.

#68 jmelott closed 1 year ago
2
Heat Map Properties dialog not vertically in sync with cursor when dragged.

#67 jmelott opened 1 year ago
0
Map detail display problems when drag-selecting on Summary panel and then zooming out to full.

#66 jmelott closed 1 year ago
1
Similar to NGCHM project issue #482, scatterplot and barplot covariates in PDFs showing up in red.

#65 jmelott opened 1 year ago
0
Drag-Select code still enabled on Summary map in Builder and creates errors in console.

#64 jmelott closed 1 year ago
1
Randomization of covariates not kept in sync with map during some edits.

#63 jmelott opened 1 year ago
8
More builder fixes

#62 bmbroom closed 1 year ago
0
Builder allows trying to create map with 1 row, but fails on last screen

#61 jmelott closed 1 year ago
1
Gaps not properly handled in Upload to GUI Builder

#60 jmelott closed 1 year ago
1
Map Build failure. Possibly due to too many entries in discrete covariate.

#59 jmelott closed 1 year ago
2
Maps uploaded from Viewer lose color information if you treat some of the rows and columns as covariates on Select Matrix page

#58 jmelott opened 1 year ago
1
Upload of a map or portion of map from viewer to GUI Builder takes a long time for large maps that fail due to size limitations of GUI Builder.

#57 jmelott opened 1 year ago
0
Heat Map Attributes: Fails with error message if blank line entered after last attribute.

#56 jmelott opened 1 year ago
3
Add ?v=md5sum to JavaScript file links to ensure new versions are used instead of cached versions.

#55 jmelott closed 1 year ago
2
Legend colors and breakpoints incorrect or missing on expanded pdf

#54 jmelott opened 1 year ago
1
Upload of entire map to builder fails - No error in console or on screen.

#53 jmelott closed 1 year ago
0
Error when clicking help button on Map upload page.

#52 jmelott opened 1 year ago
0
Showstopper fixes

#51 bmbroom closed 1 year ago
0
Fetch artifacts

#50 bmbroom closed 1 year ago
1
Error sending map created in GUI Builder back to GUI Builder from viewer.

#49 jmelott closed 1 year ago
0
Error message appears in console when switching from fully zoomed detail map back to not-fully zoomed map in Builder.

#48 jmelott closed 1 year ago
1
Improve error handling if Cluster Based covariate has more clusters than available in data.

#47 jmelott opened 1 year ago
0
Issues with color entries for covariates on maps imported from viewer.

#46 jmelott closed 1 year ago
0
Problems with attribute processing in GUI Builder with some existing maps when uploaded from viewer.

#45 jmelott closed 1 year ago
0
Upload of data from Viewer to GUI Builder breaks at some size of data transfers.

#44 jmelott closed 1 year ago
0
Errors generated in console when changing ribbon mode

#43 jmelott closed 1 year ago
0
Expanded PDF ignores gap color. It always uses white for the gaps.

#42 jmelott opened 1 year ago
0
Format Screen: GUI Builder Matrix Color/Breaks - adding point breaks with error in console.

#41 jmelott closed 1 year ago
0
Add upload api

#40 bmbroom closed 1 year ago
1
Use ngchm api

#39 bmbroom closed 1 year ago
4
Need to filter, escape and/or provide warnings about invalid characters in Heat Map Attribute and Top Label Items fields.

#38 jmelott opened 2 years ago
5
Update application infrastructure.

#37 jmelott closed 1 year ago
1
Add functionality to GUI Builder to allow it to handle creating maps with complex axis types.

#36 jmelott opened 2 years ago
0
Have GUI Builder pick up available axis types from the custom.js file rather than having them hard-coded.

#35 jmelott opened 2 years ago
0
Add calls to ActivityLog on last page of GUI Builder to track actual number of rows and columns on generated NGCHM.

#34 jmelott opened 2 years ago
0
Once created, covariates created with advanced feature "Add Cluster-Based Covariate" are not removed if option deselected.

#33 jmelott opened 2 years ago
0
If covariates taken from input matrix and then matrix transposed, then row with blank label will appear in map.

#32 jmelott opened 2 years ago
0
Expanded PDF not available for a map.

#31 jmelott opened 2 years ago
3
Builder does not always display full status of clustering operations as expected.

#30 jmelott opened 2 years ago
0
Builder should retrieve NGCHM viewer version from embedded viewer and display that version number on "About NG-CHM Builder" help page instead of using hardcoded value.

#29 jmelott opened 2 years ago
0
Entering 00 for breakpoint value causes errors in map.

#28 jmelott opened 2 years ago
1
Update bigmem branch to catch up to main

#27 ChrisWakefield closed 2 years ago
0
Coloring of table on input matrix table incorrect if rows of covariates come before the row of labels.

#26 jmelott opened 2 years ago
0