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Merck
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BioPhi
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
https://biophi.dichlab.org/
MIT License
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Error when exporting Full Table from Humanization results
#68
Laudenslager
opened
1 month ago
0
BioPhi pinned to an old version of ANARCI
#67
TheUG93
closed
3 weeks ago
2
how to set the OASis prevalence threshold when using biophi on command line?
#66
ppxwwtaking
opened
4 months ago
0
Simplified server installation issue
#65
TAAbdera
opened
4 months ago
0
Control number of mutations when humanizing
#64
lukatop
opened
4 months ago
0
AttributeError: 'Engine' object has no attribute 'cursor'
#63
drmatthewclark
closed
3 weeks ago
7
NOT WORKING
#62
rutvalg
closed
3 weeks ago
0
Task is waiting in queue
#61
C9Tang
closed
3 weeks ago
0
Internal server error: sqlite3.OperationalError)
#60
Immunoking
closed
5 months ago
2
Conda UnsatisfiableError
#59
Immunoking
closed
5 months ago
1
OASis CLI displays an Incorrect example database path
#58
mhorlacher
closed
3 weeks ago
0
fixed issue where the oasis CLI example displayed incorrect database path
#57
mhorlacher
closed
3 weeks ago
1
Task is waiting in queue...
#56
Immunoking
closed
3 weeks ago
3
Jobs stay at "waiting in queue" at BioPhi server
#55
C9Tang
closed
3 weeks ago
8
Cannot build docker
#54
Marharyta1995
opened
8 months ago
0
Integration of additional language models?
#53
kettenbh
opened
10 months ago
0
how to get raw peptide data(sequence datasets)?
#52
Veilhry
opened
10 months ago
0
Get humanness from Python script
#51
tony-res
closed
6 months ago
0
Smaller docker images
#50
mbestipa
opened
11 months ago
0
Enable cdr from grafting
#49
mbestipa
closed
4 months ago
0
Foun 1338 enable multiple humanization variants in biophi
#48
mbestipa
closed
4 months ago
0
Allowing humanization to make multiple outputs
#47
mbestipa
opened
11 months ago
0
Enable cli for humanization cdr grafting
#46
mbestipa
opened
11 months ago
0
Add mypy type checks
#45
mbestipa
opened
11 months ago
0
Fix np.int error
#44
tony-res
closed
11 months ago
0
BioPhi failed with HMMscanError: b'Parse failed (sequence file /var/folders/j7/j8sdcdk16nn_ngnyt1nc9vlw0000gn/T/tmpuhcuvvsc.fasta):\nLine 3: illegal character }\n\n' 0it [00:00, ?it/s]
#43
efrainceh
opened
11 months ago
0
Error: module 'numpy' has no attribute 'int'
#42
efrainceh
opened
11 months ago
4
unable to use cdr_grafting by BioPhi command-line interface
#41
Samuel-gwb
closed
11 months ago
2
Specify pandas version
#40
lschaus0408
opened
1 year ago
1
FOUN-1338: enable multiple fasta outputs
#39
mbestipa
closed
1 year ago
0
Compatibility with SQLAlchemy 1.4.48
#38
JPereira-FJB
closed
1 year ago
1
Use Python 3.9
#37
prihoda
closed
1 year ago
0
Compatibility with Python 3.9?
#36
JPereira-FJB
closed
1 year ago
4
Specify flask version
#35
dexho
opened
1 year ago
0
Error: Invalid sequence for "antibody"
#34
BobW4ng
opened
1 year ago
0
Observation and Fix: Sqlalchemy 2.0 Compatibility - Downgrade to Sqlalchemy 1.x
#33
pannoniac
opened
1 year ago
0
fix issue #30
#32
chrisxu2016
closed
1 year ago
1
fix issue #30
#31
chrisxu2016
closed
1 year ago
0
Using BioPhi Server to download the result file encountered an error
#30
chrisxu2016
closed
1 year ago
0
the web server Humanize can't work
#29
the8thday
closed
1 year ago
2
add navigation between results
#28
hrifanov
closed
1 year ago
0
Handle OASis cli errors
#27
prihoda
closed
1 year ago
0
Vernier CDR Grafting
#26
salvatta2
closed
1 year ago
2
Is Sapiens score more likely immunogenic if it's higher or lower?
#25
wthrif
closed
1 year ago
2
Use Sapiens from PyPI
#24
prihoda
closed
2 years ago
0
Running at local webpage
#23
kimdn
closed
1 year ago
3
Use biophi package locally in python
#22
deweihu96
closed
2 years ago
1
Return embeddings from model
#21
kvetab
closed
2 years ago
1
Computing Embeddings from Transformer?
#20
nickbhat
closed
2 years ago
3
Availability of Model Weights?
#19
nickbhat
closed
2 years ago
2
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