OpenBEL resource-generator issues

OpenBEL / resource-generator

Python modules to generate BEL resource documents.

Apache License 2.0

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#75 cthoyt closed 6 years ago
0
Add LipidMaps namespace

#74 wshayes opened 8 years ago
0
Use cell structure as a namespace for Cellular Location encoding in Statements.

#73 abargnesi opened 8 years ago
1
Incorporate default namespace into resource generator for BEL 2.0 support.

#72 abargnesi closed 8 years ago
1
EpimiRBase: a comprehensive database of microRNA-epilepsy associations

#71 wshayes opened 8 years ago
0
Error building equivalence files (related to ChEBI dataset)

#70 abargnesi closed 8 years ago
0
RGD ftp URL has changed

#69 abargnesi opened 8 years ago
0
Create BEL from EVEX

#68 wshayes opened 8 years ago
2
Make it easy to add custom annotations or namespaces.

#67 abargnesi opened 8 years ago
3
Add Cellosaurus for Cell Line annotations

#66 wshayes opened 8 years ago
0
Evaluate PDID for convertion to BEL

#65 wshayes opened 8 years ago
0
Add BEL content generator for BioPlex

#64 wshayes opened 8 years ago
0
Add a virtualenv for this python package

#63 wshayes opened 8 years ago
0
Add ChEMBL to resources

#62 wshayes opened 8 years ago
0
Missing MeSH branch

#61 tiellen closed 8 years ago
0
Splitting output into multiple files

#60 dexterpratt opened 8 years ago
0
Incorrect biological "domain" for Chebi NamespaceConceptScheme

#59 abargnesi closed 8 years ago
0
Use identifiers.org URIs for ConceptScheme and Concept resources

#58 abargnesi opened 9 years ago
2
numeric ns values are not in sequential order in bel.ns files

#57 ncatlett opened 9 years ago
0
"null" values in change_log

#56 ncatlett closed 9 years ago
2
Add HG U219 platform to Affymetrix probe sets

#55 ncatlett closed 9 years ago
0
Add MeSH A11 (Cells) branch to MeSH Anatomy belanno

#54 ncatlett closed 9 years ago
0
disease ontology namespaces missing alt ids

#53 ncatlett closed 9 years ago
0
Add date information to rdf

#52 ncatlett opened 9 years ago
0
Fix CHEBI encodings so p(CHEBI:protein) is semantically valid

#51 ncatlett opened 9 years ago
0
mesh parser; left strip "NAME =" line prefix

#50 abargnesi closed 9 years ago
1
Invalid SDIS concept in rdf output

#49 abargnesi closed 10 years ago
0
Incorporate taxon restriction info for GO terms

#48 ncatlett opened 10 years ago
0
Handling of obsolete terms

#47 ncatlett closed 9 years ago
0
incorporate tests for rdf output

#46 ncatlett opened 10 years ago
3
change_log broken by namespace name changes

#45 ncatlett closed 9 years ago
0
change_log input arguments

#44 ncatlett closed 9 years ago
1
Add old and new namespace location urls to change log

#43 ncatlett opened 10 years ago
0
Compartmentalize gp_baseline.py phase execution.

#42 digitallance closed 10 years ago
2
make gp_baseline and change_log workflows more modular

#41 ncatlett closed 9 years ago
2
streamline gp_baseline workflow

#40 ncatlett opened 10 years ago
1
update link to MeSH file in configuration.py

#39 ncatlett closed 10 years ago
0
MeSH G01, G02, G15, G17 sub-branches should be excluded from MeSH Biological processes .belns and .beleq

#38 ncatlett closed 10 years ago
1
Affy equivalences to Entrez not assigned as expected

#37 ncatlett closed 10 years ago
1
SwissProt names and accession numbers not equivalenced to EntrezGene

#36 ncatlett closed 10 years ago
0
Implement dynamic setup of default datasets directory for executing gp_baseline.py

#35 digitallance closed 10 years ago
1
Missing Swiss Prot accession numbers in .beleq file

#34 ncatlett closed 10 years ago
1
Missing RGD equivalences

#33 ncatlett closed 10 years ago
1
equivalences missing between SCHEM and ChEBI names/IDs

#32 ncatlett closed 10 years ago
1
Equivalences missing between DO and MESH Diseases

#31 ncatlett closed 10 years ago
0
equivalences missing between SDIS and DO

#30 ncatlett closed 10 years ago
0
Equivalences missing between GO and MeSH biological processes

#29 ncatlett closed 10 years ago
1
Equivalence Selventa Named Complex namespaces to GO CC

#28 ncatlett closed 10 years ago
3
.beleq and .belns files for the same namespace should have matching set of values

#27 ncatlett closed 10 years ago
4
SCHEM and SDIS namespaces and equivalences

#26 ncatlett closed 10 years ago
0