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PEtab-dev
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libpetab-python
Python package for working with PEtab files
https://libpetab-python.readthedocs.io
MIT License
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get_parameter_df: Allow any collection of parameter tables
#153
dweindl
closed
2 years ago
0
Add support for PEtab problems with multiple condition files
#152
dweindl
closed
2 years ago
1
More informative petab.calculate errors
#151
dweindl
closed
2 years ago
1
Fix handling of NaN values for parameters in condition table
#150
dweindl
closed
2 years ago
3
Plot measurements for t = 'inf'
#149
plakrisenko
closed
1 year ago
1
Unclear how to encode noise model: `Mismatch of noise parameter overrides`
#148
matthiaskoenig
closed
2 years ago
2
Update the example_visualization_without_visspec notebook
#147
plakrisenko
closed
2 years ago
0
Update example notebooks
#146
plakrisenko
closed
2 years ago
2
Add PySBModel for handling of PySB models
#145
dweindl
closed
1 year ago
1
Always re-execute example notebooks / use myst-nb
#144
dweindl
closed
2 years ago
1
Exclude `math` from `from petab.C import *`
#143
dweindl
closed
2 years ago
0
Add candidate schema for version 2
#142
dweindl
closed
2 years ago
1
Refactor yaml validation schemas
#141
dweindl
closed
2 years ago
1
Remove ancient deprecated functions related to specifying observables/noise models inside SBML
#140
dweindl
closed
2 years ago
2
Simplify test model creation - use simplesbml
#139
dweindl
closed
2 years ago
1
Handle incomplete PEtab problems in `petab.Problem.from_yaml`
#138
dweindl
closed
2 years ago
0
Update first vis example notebook; use non-deprecated functions
#137
dweindl
closed
2 years ago
3
CI: Run tests only with min+max supported Python version
#136
dweindl
closed
2 years ago
1
Speedup visspec assembly / fix deprecation warning
#135
dweindl
closed
2 years ago
1
Validator: Report empty noiseFormula
#134
dweindl
closed
2 years ago
1
Add abstraction for (SBML) models
#133
dweindl
closed
2 years ago
1
Remove ancient/deprecated default file naming scheme
#132
dweindl
closed
2 years ago
0
Remove deprecated functions related to sbml-observables
#131
dweindl
closed
2 years ago
1
Remove deprecated visualization functions
#130
dweindl
closed
2 years ago
2
petablint: Fix incorrect noise-parameter-mismatch error message
#129
dweindl
closed
2 years ago
1
Validator: Add option to warn about unused / non-standard columns
#128
dweindl
opened
2 years ago
0
Create dummy simulation conditions dataframe for empty measurements
#127
dilpath
closed
2 years ago
0
Apply get table method before write table method to ensure correct index
#126
dilpath
closed
2 years ago
1
Bugfix writing index in condition table
#125
matthiaskoenig
closed
2 years ago
0
Method to check if measurement time is at steady-state
#124
dilpath
closed
2 years ago
0
Unclear what is wrong with PEtab problem after running linter
#123
matthiaskoenig
closed
2 years ago
14
How to run validation programmatically?
#122
matthiaskoenig
closed
2 years ago
2
Release 0.1.26
#121
dweindl
closed
2 years ago
0
Fix SBML Rule handling logic
#120
dweindl
closed
2 years ago
0
Objective function
#119
EmadAlamoudi
closed
2 years ago
0
Release v0.1.25 again
#118
dilpath
closed
2 years ago
0
omit measurement processing if not relevant for parameter mapping
#117
FFroehlich
closed
2 years ago
2
Release v0.1.25
#116
dilpath
closed
2 years ago
1
fix jinja version
#115
dilpath
closed
2 years ago
1
Add steady state constant
#114
dilpath
closed
2 years ago
1
Reduce tests to min+max python?
#113
yannikschaelte
closed
2 years ago
0
fix for pytest 7.1
#112
yannikschaelte
closed
2 years ago
1
empty `noiseFormula` is invalid but passes linting
#111
FFroehlich
closed
2 years ago
0
Less ambiguous naming in generic output
#110
dilpath
closed
2 years ago
2
Release 0.1.24
#109
dilpath
closed
2 years ago
0
Generation of condition-specific SBML models
#108
dweindl
closed
2 years ago
3
Fix unclosed file warnings
#107
dilpath
closed
2 years ago
0
GHA: Regular package installation instead of -e
#106
dweindl
closed
2 years ago
1
Release 0.1.23
#105
dweindl
closed
2 years ago
1
Fix MANIFEST.in, add missing files
#104
dweindl
closed
2 years ago
1
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