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PHI-base curation
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List of potential publications containing host gene data for future curation
#113
CuzickA
opened
1 year ago
0
Should we approve curation sessions with no genes?
#112
jseager7
closed
1 year ago
12
Decide and document when species must match in primary annotation and AE
#111
CuzickA
opened
1 year ago
2
PMID:33510733 Pseudomonas aeruginosa Elastase Contributes to the Establishment of Chronic Lung Colonization and Modulates the Immune Response in a Murine Model
#110
JonMWilkes
closed
12 months ago
27
Problems loading Uniprot IDs into PhiBase5
#109
JonMWilkes
closed
1 year ago
3
PMID 34399627: Peroxiredoxin Asp f3 Is Essential for Aspergillus fumigatus To Overcome Iron Limitation during Infection.
#108
JonMWilkes
opened
1 year ago
7
PMID:32323095 The role of Pseudomonas aeruginosa DesB in pathogen-host interaction
#107
JonMWilkes
closed
1 year ago
45
PMID: 35468894 A fungal extracellular effector inactivates plant polygalacturonase-inhibiting protein
#106
CuzickA
opened
2 years ago
47
Automate edits to metagenotype for the AE compared to control
#105
CuzickA
closed
2 years ago
1
PMID: 33203871 Two nuclear effectors of the rice blast fungus modulate host immunity via transcriptional reprogramming
#104
CuzickA
closed
1 year ago
43
PMID: 25888589 A Secreted Effector Protein of Ustilago maydis Guides Maize Leaf Cells to Form Tumors
#103
CuzickA
opened
2 years ago
83
PMID:33134189 PA2146 Gene Knockout Is Associated With Pseudomonas aeruginosa Pathogenicity in Macrophage and Host Immune Response
#102
CuzickA
closed
1 year ago
36
PMID:32487759 Functional Coupling between the Unfolded Protein Response and Endoplasmic Reticulum/Golgi Ca 2+-ATPases Promotes Stress Tolerance, Cell Wall Biosynthesis, and Virulence of Aspergillus fumigatus
#101
CuzickA
opened
2 years ago
26
Cases where a curator has requested a 'bulk uploader'
#100
CuzickA
opened
2 years ago
4
PMID:10537193 Multiple amino acid substitutions in lanosterol 14alpha-demethylase contribute to azole resistance in Candida albicans.
#99
CuzickA
closed
1 year ago
4
Check usage of 'GO:0048046 apoplast' in curated sessions
#98
CuzickA
closed
2 years ago
4
PMID: 31575748 Xanthomonas translucens commandeers the host rate-limiting step in ABA biosynthesis for disease susceptibility
#97
CuzickA
opened
3 years ago
16
Examples of when it is not possible to curate metagenotype controls
#96
CuzickA
opened
3 years ago
1
Adding natural variation within genotype may be confusing for WT metagenotype 'Disease name curation type'
#95
CuzickA
opened
3 years ago
1
Examples of sessions which may need need to switch between GfG and PHI phenotype work flows
#94
CuzickA
opened
3 years ago
1
PMID:26163574 A Phytophthora sojae Glycoside Hydrolase 12 Protein Is a Major Virulence Factor during Soybean Infection and Is Recognized as a PAMP
#93
ValWood
opened
3 years ago
3
A question about infected strain
#92
ValWood
closed
3 years ago
1
PMID:27819043 The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease.
#91
CuzickA
closed
3 years ago
18
PMID: 32794614 The Brassica napus wall-associated kinase-like (WAKL) gene Rlm9 provides race-specific blackleg resistance
#90
CuzickA
closed
3 years ago
2
PMID:32883427 Functional evaluation of a homologue of plant rapid alkalinisation factor (RALF) peptides in Fusarium graminearum
#89
CuzickA
closed
3 years ago
16
Discuss use of AE 'assayed using' for PHIPO Protein-protein binding annotations to metagenotypes
#88
CuzickA
closed
3 years ago
3
Missing UniProtKB prefixes on some manually edited extensions
#87
jseager7
closed
3 years ago
4
'Secondary GO ID' errors in some sessions
#86
jseager7
closed
3 years ago
3
Restricted 'do not annotate' terms used in some sessions
#85
jseager7
closed
3 years ago
10
Typo in 'has_input' extension in PMID:30459352
#84
jseager7
closed
3 years ago
1
Update sessions still using old evidence code 'Macroscopic observation in heterologous species'
#83
CuzickA
closed
3 years ago
3
Update 'gene-for-gene' curation sessions with new GfG AE
#82
CuzickA
closed
3 years ago
10
Update all non-gene-for-gene curation sessions with new AE 'interaction_outcome' disease absent/present and control annotations
#81
CuzickA
closed
2 years ago
11
Locate annotations using abolished or absence terms
#80
jseager7
closed
3 years ago
1
Decide how to curate the 'gene-for-gene interactions' and create help documentation
#79
CuzickA
opened
3 years ago
5
How to record whether a WT host strain/cultivar is susceptible or resistant to a given pathogen
#78
CuzickA
closed
3 years ago
10
move signal pepetide removal to background where relevant
#77
ValWood
closed
4 years ago
1
remove overexpression from alleles where not relevant
#76
ValWood
closed
2 years ago
1
Enable capturing of ‘Qualitative Gene Expression Data’ with interacting species adaptations in PHI-Canto.
#74
CuzickA
closed
3 years ago
8
PMID:29434355 Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici.
#73
CuzickA
closed
3 years ago
20
PMID:18179606 Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue.
#72
CuzickA
closed
3 years ago
10
PMID:28082413 XEG1 functions both as a MAMP and an essential virulence effector of Phy- tophthora spp.
#71
ValWood
opened
4 years ago
3
Sessions with 'Unknown' expression levels
#70
jseager7
closed
4 years ago
15
new expression types
#68
CuzickA
closed
2 years ago
4
Content of Tier 1 level curation
#67
CuzickA
opened
4 years ago
1
PMID:31804478 An effector protein of the wheat stripe rust fungus targets chloroplasts and suppresses chloroplast function.
#66
CuzickA
closed
1 year ago
26
PMID:31246152 The Synchytrium endobioticum AvrSen1 Triggers a Hypersensitive Response in Sen1 Potatoes While Natural Variants Evade Detection.
#65
CuzickA
closed
3 years ago
24
PMID: 31012804 A Remorin from Nicotiana benthamiana Interacts with the Pseudomonas Type-III Effector Protein HopZ1a and is Phosphorylated by the Immune-Related Kinase PBS1.
#64
CuzickA
opened
4 years ago
5
Simplify 'media' in conditions (PHI-ECO) for PHI-Canto curations
#63
CuzickA
closed
4 years ago
16
PMID: 30148881 Structure of the Cladosporium fulvum Avr4 effector in complex with (GlcNAc)6 reveals the ligand-binding mechanism and uncouples its intrinsic function from recognition by the Cf-4 resistance protein.
#62
CuzickA
closed
3 years ago
63
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