PathwayCommons cpath2 issues

PathwayCommons / cpath2

Biological pathway data integration and access platform (Pathway Commons)

http://www.pathwaycommons.org/pc2/

MIT License

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issues

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A Neighborhood query fails when format is SBGN

#321 IgorRodchenkov closed 1 day ago
1
A graph query error

#320 IgorRodchenkov closed 1 day ago
4
Cannot access the JSON-LD version of a pathway

#319 jvwong closed 1 week ago
2
Bump commons-text from 1.6 to 1.10.0

#318 dependabot[bot] closed 12 months ago
0
Bump h2 from 2.1.210 to 2.2.220

#317 dependabot[bot] closed 12 months ago
0
H2 datasource URL args

#316 jvwong closed 1 year ago
2
Bump h2 from 1.4.197 to 2.1.210

#315 dependabot[bot] closed 1 year ago
0
Extended SIF PubMed IDs column: Source(s)

#314 jvwong closed 1 year ago
1
Datasource metadata for Biofactoid

#313 jvwong closed 1 year ago
3
Update README.md

#312 IgorRodchenkov closed 3 years ago
0
Questions about deployment

#311 metincansiper closed 4 years ago
4
PC11: links to the XML schema are broken

#310 IgorRodchenkov closed 3 months ago
1
v11/ beta: Unable to GET SBGN format

#309 jvwong closed 5 years ago
1
Metadata and console

#308 IgorRodchenkov closed 5 years ago
0
Use namespaces instead of preferred names when normalizing Xref.db values

#307 IgorRodchenkov closed 3 months ago
1
Access with API keys

#306 IgorRodchenkov opened 5 years ago
0
Graph Function Documentation Mentions BINARY_SIF That No Longer Exists

#305 cannin closed 5 years ago
2
/traverse, /search sometimes return JSON result instead XML by default (caching?)

#304 IgorRodchenkov closed 5 years ago
5
A JSON output data format for network/graph visualization

#303 IgorRodchenkov opened 5 years ago
4
Add sifgraph (xSIF, graph queries) endpoint.

#302 IgorRodchenkov opened 5 years ago
1
Pull the #298 bug-fix from the master branch.

#301 IgorRodchenkov closed 6 years ago
0
Disable HTTP POST requests (in PC v11 and after)

#300 IgorRodchenkov closed 5 years ago
1
Get rid of XML/JAXB.

#299 IgorRodchenkov closed 5 years ago
2
Invalid characters in output owl

#298 ozgunbabur closed 6 years ago
5
miRna interactions are missing from the SIF output

#297 IgorRodchenkov opened 6 years ago
0
A query bug that is probably related to ID mapping

#296 ozgunbabur closed 6 years ago
12
PANTHER: a pathway is modelled as PE and participates in a reaction

#295 IgorRodchenkov opened 6 years ago
0
Prepare PC links for embedding into bioinformatic portals

#294 IgorRodchenkov opened 6 years ago
3
Track PC web service events in GA instead ELK

#293 IgorRodchenkov closed 6 years ago
1
Missing binary (SIF) interactions and gene names.

#292 IgorRodchenkov closed 6 years ago
1
Do smth. about PANTHER component ID clash with UniProt's P* accession numbers

#291 IgorRodchenkov closed 5 years ago
0
A web service or/and data file: IDs associated with each URI

#290 IgorRodchenkov closed 5 years ago
2
PC '/get?uri=...' can go crazy (instead of fail or return empty result)

#289 IgorRodchenkov closed 6 years ago
0
Find Pathways (URIs) by member Entity URIs or IDs

#288 IgorRodchenkov closed 6 years ago
2
Resolve xref db/id to URL (a web service; using MIRIAM)

#287 IgorRodchenkov closed 6 years ago
1
TRANSPATH

#286 IgorRodchenkov opened 6 years ago
0
Remove /URI endpoint.

#285 IgorRodchenkov closed 6 years ago
0
Unusual data structure for MSigDB (Transfac) in PC2v9

#284 ozgunbabur closed 5 years ago
1
Integrate CSNDB (challenge)

#283 IgorRodchenkov closed 5 years ago
2
datasource icon urls might still use http

#282 d2fong closed 6 years ago
2
Integrate InnateDB

#281 IgorRodchenkov closed 5 years ago
2
Integrate SABIO-RK (human) data

#280 IgorRodchenkov closed 5 years ago
4
Integrate I2D (human) data

#279 IgorRodchenkov closed 5 years ago
8
Integrate SBCNY IMID (Sig2biopax)

#278 IgorRodchenkov closed 5 years ago
0
Integrate LEGO (human) data

#277 IgorRodchenkov closed 5 years ago
0
Integrate SPIKE (human) data

#276 IgorRodchenkov closed 5 years ago
1
Integrate PharmGKB (human) data

#275 IgorRodchenkov closed 5 years ago
1
Integrate Rhea (human) data

#274 IgorRodchenkov closed 5 years ago
1
Integrate BioModels (human)?

#273 IgorRodchenkov closed 5 years ago
0
Integrate ACSN (human) pathway data?

#272 IgorRodchenkov closed 5 years ago
2