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PathwayCommons
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cpath2
Biological pathway data integration and access platform (Pathway Commons)
http://www.pathwaycommons.org/pc2/
MIT License
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Broken links on the OpenAPI/Swagger page
#322
IgorRodchenkov
closed
2 weeks ago
0
A Neighborhood query fails when format is SBGN
#321
IgorRodchenkov
closed
3 weeks ago
1
A graph query error
#320
IgorRodchenkov
closed
3 weeks ago
4
Cannot access the JSON-LD version of a pathway
#319
jvwong
closed
1 month ago
2
Bump commons-text from 1.6 to 1.10.0
#318
dependabot[bot]
closed
1 year ago
0
Bump h2 from 2.1.210 to 2.2.220
#317
dependabot[bot]
closed
1 year ago
0
H2 datasource URL args
#316
jvwong
closed
1 year ago
2
Bump h2 from 1.4.197 to 2.1.210
#315
dependabot[bot]
closed
1 year ago
0
Extended SIF PubMed IDs column: Source(s)
#314
jvwong
closed
1 year ago
1
Datasource metadata for Biofactoid
#313
jvwong
closed
1 year ago
3
Update README.md
#312
IgorRodchenkov
closed
3 years ago
0
Questions about deployment
#311
metincansiper
closed
4 years ago
4
PC11: links to the XML schema are broken
#310
IgorRodchenkov
closed
3 months ago
1
v11/ beta: Unable to GET SBGN format
#309
jvwong
closed
5 years ago
1
Metadata and console
#308
IgorRodchenkov
closed
5 years ago
0
Use namespaces instead of preferred names when normalizing Xref.db values
#307
IgorRodchenkov
closed
3 months ago
1
Access with API keys
#306
IgorRodchenkov
opened
5 years ago
0
Graph Function Documentation Mentions BINARY_SIF That No Longer Exists
#305
cannin
closed
5 years ago
2
/traverse, /search sometimes return JSON result instead XML by default (caching?)
#304
IgorRodchenkov
closed
5 years ago
5
A JSON output data format for network/graph visualization
#303
IgorRodchenkov
opened
6 years ago
4
Add sifgraph (xSIF, graph queries) endpoint.
#302
IgorRodchenkov
opened
6 years ago
1
Pull the #298 bug-fix from the master branch.
#301
IgorRodchenkov
closed
6 years ago
0
Disable HTTP POST requests (in PC v11 and after)
#300
IgorRodchenkov
closed
5 years ago
1
Get rid of XML/JAXB.
#299
IgorRodchenkov
closed
5 years ago
2
Invalid characters in output owl
#298
ozgunbabur
closed
6 years ago
5
miRna interactions are missing from the SIF output
#297
IgorRodchenkov
opened
6 years ago
0
A query bug that is probably related to ID mapping
#296
ozgunbabur
closed
6 years ago
12
PANTHER: a pathway is modelled as PE and participates in a reaction
#295
IgorRodchenkov
opened
6 years ago
0
Prepare PC links for embedding into bioinformatic portals
#294
IgorRodchenkov
opened
6 years ago
3
Track PC web service events in GA instead ELK
#293
IgorRodchenkov
closed
6 years ago
1
Missing binary (SIF) interactions and gene names.
#292
IgorRodchenkov
closed
6 years ago
1
Do smth. about PANTHER component ID clash with UniProt's P* accession numbers
#291
IgorRodchenkov
closed
5 years ago
0
A web service or/and data file: IDs associated with each URI
#290
IgorRodchenkov
closed
5 years ago
2
PC '/get?uri=...' can go crazy (instead of fail or return empty result)
#289
IgorRodchenkov
closed
6 years ago
0
Find Pathways (URIs) by member Entity URIs or IDs
#288
IgorRodchenkov
closed
6 years ago
2
Resolve xref db/id to URL (a web service; using MIRIAM)
#287
IgorRodchenkov
closed
6 years ago
1
TRANSPATH
#286
IgorRodchenkov
opened
6 years ago
0
Remove /URI endpoint.
#285
IgorRodchenkov
closed
6 years ago
0
Unusual data structure for MSigDB (Transfac) in PC2v9
#284
ozgunbabur
closed
5 years ago
1
Integrate CSNDB (challenge)
#283
IgorRodchenkov
closed
5 years ago
2
datasource icon urls might still use http
#282
d2fong
closed
6 years ago
2
Integrate InnateDB
#281
IgorRodchenkov
closed
5 years ago
2
Integrate SABIO-RK (human) data
#280
IgorRodchenkov
closed
5 years ago
4
Integrate I2D (human) data
#279
IgorRodchenkov
closed
5 years ago
8
Integrate SBCNY IMID (Sig2biopax)
#278
IgorRodchenkov
closed
5 years ago
0
Integrate LEGO (human) data
#277
IgorRodchenkov
closed
5 years ago
0
Integrate SPIKE (human) data
#276
IgorRodchenkov
closed
5 years ago
1
Integrate PharmGKB (human) data
#275
IgorRodchenkov
closed
5 years ago
1
Integrate Rhea (human) data
#274
IgorRodchenkov
closed
5 years ago
1
Integrate BioModels (human)?
#273
IgorRodchenkov
closed
5 years ago
0
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