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PoonLab
/
covizu
Rapid analysis and visualization of coronavirus genome variation
https://filogeneti.ca/CoVizu/
MIT License
45
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20
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Make variants in bead plots collapsible
#434
ArtPoon
opened
1 year ago
1
Migrate to a database
#433
nav-mohan
closed
1 year ago
20
Deprecate countries.json and bug fix
#432
ArtPoon
closed
1 year ago
7
Changes to VirusSeq API
#431
ArtPoon
closed
1 year ago
2
Reordering of Beadplots
#430
bonnielu
closed
1 year ago
0
vsportal: Pipeline failed 2022-10-09
#429
GopiGugan
closed
1 year ago
2
Not all lineages being displayed in the tree
#428
bonnielu
closed
1 year ago
2
Renew SSL certificate for website
#427
ArtPoon
closed
1 year ago
2
Minor: Bug fixes and filter recombinant lineages from the time-scaled tree
#426
GopiGugan
closed
1 year ago
6
Remove recombinant lineages from the time-scaled tree
#425
GopiGugan
closed
1 year ago
1
Search is partially broken
#424
GopiGugan
closed
1 year ago
2
VirusSeq: timetree has omicron placed outside of main tree
#423
ArtPoon
closed
1 year ago
6
Ignore irregular lines in the lineages.csv file
#422
GopiGugan
closed
2 years ago
0
DOMException: illegal character?
#421
ArtPoon
closed
1 year ago
2
Feature request: scrolling past bottom in tree or beadplot panel should propagate to main window
#420
ArtPoon
closed
1 year ago
1
Add button to export mutation lists
#419
ArtPoon
closed
1 year ago
0
Clear out stale branches
#418
ArtPoon
closed
2 years ago
0
Time-scaled tree is being rendered past bottom of page
#417
ArtPoon
closed
2 years ago
0
Irregular formatting in lineages.csv file is causing the pipeline to crash
#416
ArtPoon
closed
2 years ago
8
Remove recombinant lineages from time-scaled tree
#415
GopiGugan
closed
1 year ago
3
Dev
#414
ArtPoon
closed
2 years ago
1
Filtering recombinant lineages
#413
ArtPoon
closed
1 year ago
0
Repeated crashes on SuperDome
#412
ArtPoon
closed
2 years ago
2
Substring search seems to be broken
#411
ArtPoon
closed
2 years ago
1
Beadplot is not updating when searching for a lineage
#410
GopiGugan
closed
2 years ago
1
Tree filter
#409
ArtPoon
closed
2 years ago
2
Pipeline failed 2022-06-25
#408
GopiGugan
closed
2 years ago
6
Merge current `master` branch to `vsportal`
#407
ArtPoon
closed
2 years ago
2
Issues installing development environment
#406
ArtPoon
closed
2 years ago
3
Remove recombinant lineages from time-scaled tree
#405
ArtPoon
closed
1 year ago
8
Dev
#404
ArtPoon
closed
2 years ago
3
lineages.csv file needs to be updated on VirusSeq backend server
#403
ArtPoon
closed
2 years ago
4
Odd slider behaviour
#402
GopiGugan
closed
2 years ago
3
Improve page load times
#401
GopiGugan
closed
2 years ago
4
copied files from iss396, trying to avoid changing submodules
#400
ArtPoon
closed
2 years ago
0
Iss396
#399
ArtPoon
closed
2 years ago
1
Improving page load times
#398
GopiGugan
closed
2 years ago
1
Epicov tree has negative branch lengths
#397
ArtPoon
closed
2 years ago
3
Timetree just started to place BA.* clade in a basal position
#396
ArtPoon
closed
2 years ago
3
Iss387
#395
ArtPoon
closed
2 years ago
0
Poisson regression is not a good model for filtering variants anymore
#394
ArtPoon
closed
2 years ago
2
Memory consumption in browser
#393
ArtPoon
closed
2 years ago
2
can reversions be flagged?
#392
ArtPoon
opened
2 years ago
0
Wrong install location for submodule files
#391
ArtPoon
closed
2 years ago
2
Quick fix of issue #384 and #386
#390
ArtPoon
closed
2 years ago
5
continuous integration
#389
ArtPoon
closed
1 year ago
12
Circular import in gisaid_utils.py
#388
ArtPoon
closed
2 years ago
3
Memory consumption by `by_lineage` dict
#387
ArtPoon
closed
2 years ago
21
Mutation table does not display all mutations
#386
ArtPoon
closed
2 years ago
8
shifting baselines on the clock residuals
#385
spotto
closed
2 years ago
9
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