issues
search
RNA-FRETools
/
MASH-FRET
MATLAB package to analyze single-molecule FRET data
https://rna-fretools.github.io/MASH-FRET/
GNU General Public License v3.0
8
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Cannot import a previously filtered video file
#140
snguyen49
opened
1 month ago
0
Transition probability always stays at 0
#139
snguyen49
opened
1 month ago
3
Various errors regarding opening and closing
#138
snguyen49
opened
1 month ago
2
Exporting trajectories and information for only one molecule
#137
snguyen49
closed
1 month ago
5
Merging traces with Dynamic Background
#136
nsivan16
closed
2 months ago
7
Question about analysis with MASH-FRET
#135
snguyen49
closed
4 months ago
5
MASH- FRET does not calculate traces over the whole channel pictures
#134
Much756
closed
5 months ago
1
Exporting traces to text files without FRET gives an error
#133
ckjohnson517
closed
5 months ago
4
FRET Traces not showing up in Trace processing
#132
snguyen49
closed
5 months ago
5
Automatically load spots coordinates for intensity integration in case of single-channel video projects.
#131
mca-sh
closed
7 months ago
0
Use to take trajectories for just one channel?
#130
snguyen49
closed
7 months ago
12
Poisson SNR characteristics
#129
snguyen49
closed
7 months ago
3
Correct reference points leaking in mapping tool.
#128
mca-sh
closed
7 months ago
0
Spotting tool + zoom function issue
#127
snguyen49
closed
7 months ago
2
Add zoom function in Mapping tool
#126
mca-sh
closed
7 months ago
0
Spotting tool being funny with a 2048x2048 video
#125
snguyen49
closed
7 months ago
3
Adapt TA test routine to histogram-based projects
#124
mca-sh
closed
7 months ago
0
Simulation kinetic model not matching video project kinetic model; video project traces finding more states than was intended with not enough data to generate ml-dph
#123
snguyen49
closed
8 months ago
20
Handle error when an .avi file is used for intensity integration
#122
mca-sh
closed
9 months ago
0
Calculate traces only works for .sira files not .avi files
#121
snguyen49
closed
9 months ago
1
I am unable to click on save after importing video. These errors are occurring
#120
gtripathi1
closed
4 months ago
2
MASH-FRET bug report- I am unable to spot the coordinates now .
#119
gtripathi1
closed
9 months ago
0
Correct exclusion of doublon coordinates after channel transformation.
#118
mca-sh
closed
9 months ago
0
Resampling trajectories from project list and replacement of problematic project field `frame_rate` by `sampling_time`
#117
mca-sh
closed
7 months ago
0
Workaround ML-DPH overestimation due to overbinning of dwell time histogram
#116
mca-sh
closed
9 months ago
0
BIC-ML-DPH is not running, Error : Error while evaluating UIControl Callback, in the section of Kinetic model, in transition analysis
#115
gtripathi1
closed
4 months ago
7
New Video Project not calculating traces
#114
snguyen49
closed
9 months ago
46
"Estimate Rate Constants" generating a loop and not finishing
#113
snguyen49
closed
9 months ago
14
Implement histogram-based projects
#112
mca-sh
closed
9 months ago
0
Allows math expressions in online doc with mathjax3
#111
mca-sh
closed
10 months ago
0
State-finding method `STaSI+vbFRET-1D`, sorting data `state lifetimes` and bug fixes
#110
mca-sh
closed
10 months ago
0
Fix state bin and unbreak doc
#109
mca-sh
closed
11 months ago
0
fix Liquid Exception when compiling doc pages
#108
mca-sh
closed
11 months ago
0
Various improvements and bug fixes in VP, TP and HA
#107
mca-sh
closed
11 months ago
0
bug when exporting simulated traces
#106
LeonieUniFR
closed
1 year ago
2
Review simulation presets
#105
mca-sh
closed
1 year ago
0
simulation pre-set file not read properly
#104
LeonieUniFR
closed
1 year ago
5
fix error occurring when exporting data from Simulation
#103
mca-sh
closed
1 year ago
0
updates ML-DPH and BW analysis as in DPH article in prep.
#102
mca-sh
closed
1 year ago
0
Correct exclusion of molecule coordinates and other minor stuff
#101
mca-sh
closed
1 year ago
0
More than three states causes multiple errors when trying to export
#100
snguyen49
closed
1 year ago
4
Dynamic background correction
#99
mca-sh
closed
1 year ago
0
adapt memory allocation to MACOS
#98
mca-sh
closed
1 year ago
0
fix calculation of average image for tif files
#97
mca-sh
closed
1 year ago
0
simulated thermodynamic model is not recovered after transition analysis
#96
snguyen49
opened
1 year ago
9
Type error when computing average image
#95
AndersBarth
closed
1 year ago
1
Incorrect checking of available memory on MacOS
#94
AndersBarth
closed
1 year ago
1
Background-corrected trajectories drop below zero
#93
nsivan16
closed
1 year ago
5
fix trace export
#92
mca-sh
closed
1 year ago
0
Manage merging of projects with different video sampling times
#91
mca-sh
closed
1 year ago
0
Next