SciLifeLab facs issues - Githubissues

SciLifeLab / facs

Fast and Accurate Classification of Sequences using Bloom filters

http://facs.scilifelab.se/

Other

16 stars 9 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

shouldn't return 0

#133 Dreycey closed 1 year ago
0
TravisCI tests failing due to 1000genomes file path change upstream

#132 brainstorm closed 8 years ago
2
Refactoring conditional directives for alternative if statements.

#131 wmarquesr closed 8 years ago
2
add the 'lost' mpi_bloom.h

#130 tzcoolman closed 9 years ago
3
is 'mpi_bloom.h' mandatory and included?

#129 dbrami opened 9 years ago
6
Clarify cmdline and python interfaces, solves issue #127

#128 brainstorm closed 10 years ago
0
Please update the docs

#127 dbrami closed 10 years ago
1
Describe the file structure of a .bloom filter

#126 brainstorm opened 10 years ago
1
Build Bowtie2 indexes

#125 guillermo-carrasco closed 10 years ago
0
Robust construction of file_path.

#124 okulev closed 10 years ago
1
Proper closing of file descriptors in bloom.c.

#123 okulev closed 10 years ago
3
FACS has problems in MAC OsX

#122 guillermo-carrasco opened 10 years ago
5
Bowtie2 index shouldn't be hardcoded

#121 guillermo-carrasco closed 10 years ago
0
Add "coverity scan" static code analysis

#120 brainstorm closed 10 years ago
1
Bowtie2 not working properly

#119 guillermo-carrasco closed 10 years ago
0
Deprecated innocentive test, basic bowtie & bowtie2 versions test

#118 brainstorm closed 10 years ago
3
Do not regenerate existent datasets

#117 guillermo-carrasco closed 10 years ago
2
Add bowtie version metadata to JSON reports

#116 brainstorm closed 10 years ago
0
Add an extra cleanup at the end of the test, bowtie1 results got overriden by bowtie2

#115 brainstorm closed 10 years ago
0
Bowtie2 site-specific tweaks for fastq_screen with Bowtie2

#114 brainstorm closed 10 years ago
0
Add support for memory benchmarking

#113 guillermo-carrasco closed 10 years ago
3
add various descriptions

#112 tzcoolman closed 10 years ago
1
Generate correct number of reads with SimNGS

#111 guillermo-carrasco closed 10 years ago
1
Upgrade to fastq_screen 0.4.2 and preparations for precision and recall graphs

#110 brainstorm closed 10 years ago
0
Python's FACS remove needs to capture stdout/stderr

#109 brainstorm opened 10 years ago
0
Accuracy plots

#108 brainstorm closed 10 years ago
2
Generation of 6000 reads to perform accuracy tests

#107 brainstorm closed 10 years ago
1
Add plots for the original FACS 1.0 dataset

#106 brainstorm opened 10 years ago
23
Memory benchmarking

#105 guillermo-carrasco closed 10 years ago
5
Fix overwriting of some FACS results

#104 guillermo-carrasco closed 10 years ago
1
Multithreading benchmark for fastq_screen and FACS

#103 brainstorm closed 10 years ago
1
Contamination rates for fastq_screen corrected

#102 brainstorm closed 10 years ago
1
fix issue #98

#101 tzcoolman closed 10 years ago
1
Some views + incorporation of awakening function

#100 guillermo-carrasco closed 10 years ago
0
Make sure number of threads are the same in tests

#99 brainstorm closed 10 years ago
2
Have FACS report full paths to sample

#98 brainstorm closed 10 years ago
1
Adding an ipython notebook to explore the benchmarks data

#97 brainstorm closed 10 years ago
4
Performance/accuracy script, extracts information from CouchDB database

#96 brainstorm closed 10 years ago
2
Deconseq does not report filter and returns incorrect contamination rate

#95 brainstorm opened 10 years ago
2
Reproducible simNGS runs and multi-library check for Fastq_screen

#94 brainstorm closed 10 years ago
0
fix issue #90

#93 tzcoolman closed 10 years ago
1
Fix FACS JSON reporting

#92 brainstorm closed 10 years ago
0
fix no json output issue. see what will happen on travis

#91 tzcoolman closed 10 years ago
0
python: Bad address when inverting arguments for facs.query

#90 brainstorm closed 10 years ago
2
python: returning a JSON document is gone

#89 brainstorm closed 10 years ago
5
python: do not bail out when file is not found

#88 brainstorm opened 10 years ago
1
Adjusting generation of reads for simNGS, fixes issue #78

#87 brainstorm closed 10 years ago
0
Move configuration template out of code, fixes issue #79

#86 brainstorm closed 10 years ago
1
merge check.c into query.c & add instruction for remove.c

#85 tzcoolman closed 10 years ago
1
Merge query.c and check.c into check.c

#84 brainstorm closed 10 years ago
1