issues
search
SciLifeLab
/
facs
Fast and Accurate Classification of Sequences using Bloom filters
http://facs.scilifelab.se/
Other
16
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
shouldn't return 0
#133
Dreycey
closed
1 year ago
0
TravisCI tests failing due to 1000genomes file path change upstream
#132
brainstorm
closed
8 years ago
2
Refactoring conditional directives for alternative if statements.
#131
wmarquesr
closed
8 years ago
2
add the 'lost' mpi_bloom.h
#130
tzcoolman
closed
10 years ago
3
is 'mpi_bloom.h' mandatory and included?
#129
dbrami
opened
10 years ago
6
Clarify cmdline and python interfaces, solves issue #127
#128
brainstorm
closed
10 years ago
0
Please update the docs
#127
dbrami
closed
10 years ago
1
Describe the file structure of a .bloom filter
#126
brainstorm
opened
10 years ago
1
Build Bowtie2 indexes
#125
guillermo-carrasco
closed
10 years ago
0
Robust construction of file_path.
#124
okulev
closed
10 years ago
1
Proper closing of file descriptors in bloom.c.
#123
okulev
closed
10 years ago
3
FACS has problems in MAC OsX
#122
guillermo-carrasco
opened
10 years ago
5
Bowtie2 index shouldn't be hardcoded
#121
guillermo-carrasco
closed
10 years ago
0
Add "coverity scan" static code analysis
#120
brainstorm
closed
10 years ago
1
Bowtie2 not working properly
#119
guillermo-carrasco
closed
10 years ago
0
Deprecated innocentive test, basic bowtie & bowtie2 versions test
#118
brainstorm
closed
10 years ago
3
Do not regenerate existent datasets
#117
guillermo-carrasco
closed
10 years ago
2
Add bowtie version metadata to JSON reports
#116
brainstorm
closed
10 years ago
0
Add an extra cleanup at the end of the test, bowtie1 results got overriden by bowtie2
#115
brainstorm
closed
10 years ago
0
Bowtie2 site-specific tweaks for fastq_screen with Bowtie2
#114
brainstorm
closed
10 years ago
0
Add support for memory benchmarking
#113
guillermo-carrasco
closed
10 years ago
3
add various descriptions
#112
tzcoolman
closed
10 years ago
1
Generate correct number of reads with SimNGS
#111
guillermo-carrasco
closed
10 years ago
1
Upgrade to fastq_screen 0.4.2 and preparations for precision and recall graphs
#110
brainstorm
closed
10 years ago
0
Python's FACS remove needs to capture stdout/stderr
#109
brainstorm
opened
10 years ago
0
Accuracy plots
#108
brainstorm
closed
10 years ago
2
Generation of 6000 reads to perform accuracy tests
#107
brainstorm
closed
10 years ago
1
Add plots for the original FACS 1.0 dataset
#106
brainstorm
opened
10 years ago
23
Memory benchmarking
#105
guillermo-carrasco
closed
10 years ago
5
Fix overwriting of some FACS results
#104
guillermo-carrasco
closed
10 years ago
1
Multithreading benchmark for fastq_screen and FACS
#103
brainstorm
closed
10 years ago
1
Contamination rates for fastq_screen corrected
#102
brainstorm
closed
10 years ago
1
fix issue #98
#101
tzcoolman
closed
10 years ago
1
Some views + incorporation of awakening function
#100
guillermo-carrasco
closed
10 years ago
0
Make sure number of threads are the same in tests
#99
brainstorm
closed
10 years ago
2
Have FACS report full paths to sample
#98
brainstorm
closed
10 years ago
1
Adding an ipython notebook to explore the benchmarks data
#97
brainstorm
closed
10 years ago
4
Performance/accuracy script, extracts information from CouchDB database
#96
brainstorm
closed
10 years ago
2
Deconseq does not report filter and returns incorrect contamination rate
#95
brainstorm
opened
10 years ago
2
Reproducible simNGS runs and multi-library check for Fastq_screen
#94
brainstorm
closed
10 years ago
0
fix issue #90
#93
tzcoolman
closed
11 years ago
1
Fix FACS JSON reporting
#92
brainstorm
closed
11 years ago
0
fix no json output issue. see what will happen on travis
#91
tzcoolman
closed
11 years ago
0
python: Bad address when inverting arguments for facs.query
#90
brainstorm
closed
11 years ago
2
python: returning a JSON document is gone
#89
brainstorm
closed
11 years ago
5
python: do not bail out when file is not found
#88
brainstorm
opened
11 years ago
1
Adjusting generation of reads for simNGS, fixes issue #78
#87
brainstorm
closed
11 years ago
0
Move configuration template out of code, fixes issue #79
#86
brainstorm
closed
11 years ago
1
merge check.c into query.c & add instruction for remove.c
#85
tzcoolman
closed
11 years ago
1
Merge query.c and check.c into check.c
#84
brainstorm
closed
11 years ago
1
Next