issues
search
SionBayliss
/
PIRATE
A toolbox for pangenome analysis and threshold evaluation.
GNU General Public License v3.0
88
stars
29
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
PIRATE -c doesn't work (but --check does)
#39
tseemann
closed
4 years ago
1
Adding more genomes to a PIRATE run
#38
parul-sharma
closed
4 years ago
2
Extract shared genes of a set of genomes compare with the others
#37
igarrom
closed
4 years ago
2
PIRATE_to_roary.pl: command not found
#36
mabouelk
closed
4 years ago
5
pangenome_alignment.fasta file explanation
#35
cizydorczyk
closed
4 years ago
2
add a table of new ID and previous ID after modifying gffs
#34
jeanmanguy
closed
4 years ago
6
problem with fasttree and --pan-off
#33
aysunrhn
closed
4 years ago
2
Problem with creating core alignments
#32
Tao2020yes
closed
4 years ago
3
most output files missing
#31
samlipworth
closed
4 years ago
4
Question: Which type of homology is used with a mix of feature types?
#30
cizydorczyk
closed
4 years ago
1
Still getting fasttree error
#29
tseemann
closed
4 years ago
2
replace xargs with parallel
#28
tseemann
closed
4 years ago
0
use parallel instead of xargs ?
#27
tseemann
closed
4 years ago
2
bioconda recipe in progress
#26
tseemann
closed
4 years ago
4
More genomes to an existing PIRATE run
#25
maguileraf
closed
4 years ago
1
Add brew install instructions
#24
tseemann
closed
4 years ago
0
Use FindBin to locate true location of script
#23
tseemann
closed
4 years ago
1
Replace mkdir with File::Path make_path
#22
tseemann
closed
4 years ago
4
Added to Brew pkg manager
#21
tseemann
closed
4 years ago
8
Bug with checking dependencies
#20
tseemann
closed
4 years ago
1
fasttree vs FastTree still not working
#19
tseemann
closed
4 years ago
2
List non-core Perl module dependencies
#18
tseemann
closed
4 years ago
2
memory as a command-line argument?
#17
JA-Lacey
closed
4 years ago
14
PIRATE --check wants to write to its own folder?
#16
tseemann
closed
4 years ago
1
select_representative does not have .pl ending - odd one out
#15
tseemann
closed
4 years ago
1
3 scripts are not executable
#14
tseemann
closed
4 years ago
1
Faulty #! lines in scripts/*.pl
#13
tseemann
closed
4 years ago
1
--help should not return error
#12
tseemann
closed
4 years ago
1
Add --version
#11
tseemann
closed
4 years ago
1
Tag a release?
#10
tseemann
closed
4 years ago
3
possible bug with unlinking files
#9
tseemann
closed
4 years ago
1
fasttree vs FastTree ?
#8
tseemann
closed
4 years ago
1
Typo
#7
tseemann
closed
4 years ago
1
Cannot install
#6
pavlo888
closed
5 years ago
5
[Feature] Make output file with original gene designations from GFF files
#5
dutchscientist
closed
5 years ago
3
Scoary crashes on PIRATE converted output file due to "--include_input_columns ALL" option
#4
dutchscientist
closed
5 years ago
3
Update jokes.txt
#3
happykhan
closed
5 years ago
0
rplots vs rplot
#2
harry-thorpe
closed
5 years ago
1
CD-HIT called wrongly in PangenomeConstruction.pl and PangenomeConstruction.bkup2.pl
#1
thorellk
closed
6 years ago
1
Previous