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UT-Covid
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episimlab
Framework for development of epidemiological models
https://ut-covid.github.io/episimlab/
BSD 3-Clause "New" or "Revised" License
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Output transition matrix
#58
kellypierce
closed
2 years ago
2
Granular Model
#57
kellypierce
opened
2 years ago
0
Fix #55
#56
ethho
closed
2 years ago
0
Re-add omega to FOI calculation
#55
ethho
closed
2 years ago
0
JOSS Manuscript
#52
ethho
opened
2 years ago
1
Prep for JOSS submission
#51
ethho
closed
2 years ago
0
Update documentation
#50
ethho
closed
2 years ago
0
Fix #48
#49
ethho
closed
2 years ago
8
Refactor partition module in xarray
#48
ethho
closed
2 years ago
0
Add demo Colab notebooks
#47
ethho
closed
2 years ago
0
Generic SetupSampler for stochastic state transitions
#46
kellypierce
opened
2 years ago
1
xarray implementation of sampling in vaccine dosage model
#45
kellypierce
opened
2 years ago
0
Add demo vaccine model
#44
ethho
closed
2 years ago
2
Fix #42
#43
ethho
closed
2 years ago
1
Limited to python 3.8 support
#42
ethho
closed
2 years ago
0
Negative values in state matrix when stochastic
#41
ethho
closed
2 years ago
1
V2 alpha
#40
ethho
closed
2 years ago
2
Fix new_S in compt model engines
#39
ethho
closed
2 years ago
1
37 incidence compt
#38
kellypierce
closed
2 years ago
4
Re-implement incidence compartments
#37
ethho
closed
2 years ago
1
Vaccination model
#36
kellypierce
closed
2 years ago
0
Simply math in SEIR models
#35
kellypierce
closed
2 years ago
2
New SEIR process that includes FOI calculation
#34
ethho
closed
2 years ago
0
New SEIR process with FOI included
#33
ethho
closed
2 years ago
1
Vertex ID as string
#32
kellypierce
opened
2 years ago
0
Enforce step_delta consistency
#31
kellypierce
opened
2 years ago
1
demo ZCTA epidemic curves
#30
kellypierce
closed
2 years ago
2
Clean up for a minor release (v1.1.0)
#29
ethho
closed
2 years ago
1
Clean up for a v1.0.0
#28
ethho
closed
3 years ago
0
Housekeeping for v1.0
#27
ethho
closed
2 years ago
2
Benchmarks for LCCF Proposal
#26
ethho
closed
3 years ago
8
Add CLI v1-alpha
#25
ethho
closed
3 years ago
0
Faster partitioning with dask and xarray
#24
kellypierce
closed
3 years ago
0
Partition process generates age groups from join on travel and contacts dfs
#23
ethho
closed
3 years ago
0
Partition ingests age_group coordinates
#22
ethho
closed
3 years ago
4
Model that uses Partition instead of PartitionFromNC
#21
ethho
closed
3 years ago
2
Benchmark model with Partition instead of PartitionFromNC
#20
ethho
closed
3 years ago
0
Alternative implementation of #18
#19
ethho
closed
3 years ago
1
Addition of `travel_management.py`
#18
kellypierce
closed
3 years ago
0
KeyError in Partition process
#17
ethho
closed
3 years ago
1
Implement higher level API
#16
ethho
opened
3 years ago
1
Deprecate phi_grp_mapping
#15
ethho
closed
3 years ago
2
Deprecate phi_grp_mapping
#14
ethho
closed
3 years ago
1
Run Partition process in model context
#13
ethho
closed
3 years ago
4
Add model that implements new Partition process
#12
ethho
closed
3 years ago
0
Calculate FOI without for loops
#11
ethho
closed
2 years ago
3
Deprecate partition.toy and partition.from_travel
#10
ethho
closed
3 years ago
0
WIP: add `partition.py`
#9
kellypierce
closed
3 years ago
2
Residual error is time-scaled vector
#8
ethho
closed
3 years ago
0
Residual error incorrectly calculated
#7
ethho
closed
3 years ago
0
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