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WayScience
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phenotypic_profiling
Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles
Creative Commons Attribution 4.0 International
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[Response to Reviewers] Add Silhouette analysis
#68
gwaybio
closed
5 days ago
2
[Response to Reviewers] Update dimensionality reduction figures
#67
gwaybio
closed
5 days ago
2
Increase font size and fix arrangement of figure 4
#66
gwaybio
closed
6 months ago
2
update download path
#65
roshankern
closed
6 months ago
2
Add details to Readme
#64
gwaybio
closed
6 months ago
0
Change repo name
#63
gwaybio
closed
6 months ago
4
Repo cleanup
#62
roshankern
closed
6 months ago
1
Add enrichment and introductory notes to readme
#61
gwaybio
closed
6 months ago
0
Switch to top 100 enriched treatments in JUMP (new sup table)
#60
gwaybio
closed
6 months ago
2
Minor tweaks to Sup Figure 8
#59
gwaybio
closed
6 months ago
2
Minor tweaks to sup fig 7
#58
gwaybio
closed
6 months ago
1
Add Figure 1
#57
jenna-tomkinson
closed
7 months ago
6
Process jump single cell data
#56
gwaybio
closed
7 months ago
5
Add JUMP analysis figure
#55
gwaybio
closed
6 months ago
2
Single cell count discrepancy in LOIO analysis
#54
gwaybio
closed
6 months ago
11
Adding supplementary LOIO figure
#53
gwaybio
closed
7 months ago
1
Update loio summary
#52
gwaybio
closed
7 months ago
2
Add models with no-ic [training and LOIO]
#51
gwaybio
closed
7 months ago
4
Update evaluate module (no ic)
#50
roshankern
closed
8 months ago
1
Add No IC (0.Download, 1.Split, 2.Train)
#49
roshankern
closed
8 months ago
1
Adding feature importance visualizations
#48
gwaybio
closed
7 months ago
2
Updating LOIO visualization
#47
gwaybio
closed
7 months ago
3
Updating LOIO analysis to include all features spaces
#46
gwaybio
closed
10 months ago
2
Update Figure 3 to balanced model
#45
gwaybio
closed
11 months ago
1
Add training/models of Zernike and AreaShape feature space only
#44
gwaybio
closed
11 months ago
2
Visualize performance for subset featurespaces
#43
gwaybio
closed
10 months ago
3
Add JUMP Mitocheck feature analysis comparison with KS tests
#42
gwaybio
closed
10 months ago
2
Adding single-class model evaluation [Supplementary Figure]
#41
gwaybio
closed
11 months ago
1
Adding Figure 4 - Leave One Image Out Analysis
#40
gwaybio
closed
11 months ago
3
Adding figure 3 and associated notebook
#39
gwaybio
closed
11 months ago
1
Adding several publication ready figures [Figure 2, Supplementary Figs 2 and 3]
#38
gwaybio
closed
12 months ago
2
Update docs
#37
roshankern
closed
1 year ago
2
Update readmes
#36
roshankern
closed
1 year ago
0
Cp feature refactor
#35
roshankern
closed
1 year ago
1
Add classifications preview
#34
roshankern
closed
1 year ago
2
Refactor validate module
#33
roshankern
closed
1 year ago
3
update single cell images module
#32
roshankern
closed
1 year ago
1
Remove unused cp features
#31
roshankern
closed
1 year ago
1
Add SCM Interpretations
#30
roshankern
closed
1 year ago
4
Get SCM Predictions and LOIO Probabilities
#29
roshankern
closed
1 year ago
1
Get SCM Predictions and LOIO Probabilities
#28
roshankern
closed
1 year ago
2
Add SCM confusion matrices and F1 scores
#27
roshankern
closed
1 year ago
2
Add Single Class Model PR Curves
#26
roshankern
closed
1 year ago
3
Train single class models
#25
roshankern
closed
1 year ago
2
Adding CP features to ggplot visualization
#24
gwaybio
closed
1 year ago
8
Get Leave One Image Out Probabilities
#23
roshankern
closed
1 year ago
2
Refactor interpret module
#22
roshankern
closed
1 year ago
1
Refactor evaluate module
#21
roshankern
closed
1 year ago
4
Train module refactor
#20
roshankern
closed
1 year ago
0
Refactor Split Data Module
#19
roshankern
closed
1 year ago
0
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