aertslab create_cisTarget_databases issues

aertslab / create_cisTarget_databases

Create cisTarget databases

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Database creation for Killifish

#53 juhi-ku opened 3 weeks ago
4
> @mtxellrb A script for creating a track database from bigWig TF ChIP-seq data is now added :`create_cistarget_track_databases.py`

#52 MatthewTCManion opened 1 month ago
13
The public motif collection PWMs for motifs-v9-nr

#51 QianzhaoJ opened 2 months ago
1
Try to create the chicken cisdatabase

#50 LJZYaaa opened 3 months ago
8
The 'zsync' files of databases file might be incorrect.

#49 NirvanaCh opened 4 months ago
5
create_motif_cisTarget worked but no feature file

#48 XiaoKaixuan12333 closed 5 months ago
0
PWMs in motif collection.

#47 FelixWaern opened 5 months ago
1
Creating custom regions_vs_motifs.rankings.feather file

#46 YaoLi3 closed 8 months ago
2
how to get the 'genes_vs_motifs.rankings.feather'

#45 krayon4river opened 10 months ago
1
Creating a cisTarget database for Plant

#44 wujiayi666-star opened 1 year ago
0
Are we going to have mice mm39/GRCm39 database?

#43 xinyixinyijiang closed 1 year ago
4
convert SCENIC+ public motif collection to HOMER format

#42 pchiang5 opened 1 year ago
1
FASTA Input to Generate SCENIC+ Databases for Rat

#41 jonhsussman opened 1 year ago
2
build mm10 regions based databases

#40 WGLUN opened 1 year ago
4
Creating a cisTarget database for Zebrafish

#39 RcuIT opened 1 year ago
6
Problems encountered during the construction of the Red Eared Turtle database

#38 zhongguodiyidao opened 1 year ago
4
motif2TF

#37 Lidw2020 opened 1 year ago
6
@honghh2018 You can use the mouse or human motif table and replace the gene_name column with the homologous gene for rat.

#36 Lidw2020 opened 1 year ago
0
What is the correct workflow for creating tracks DBs?

#35 eboileau opened 1 year ago
7
Beg for human TFs motif files

#34 AIBio closed 1 year ago
1
Wrong feather file?

#33 AIBio closed 1 year ago
4
Missing Feather data in cisTarget database

#32 zhouxw27 closed 1 year ago
1
404 not found of calibration file URL

#31 zhouxw27 closed 1 year ago
2
How can I use the "genes_vs_motifs.feather" into R SCENIC

#30 CNChunhua opened 1 year ago
0
there are only three feather while need four

#29 shangguandong1996 closed 1 year ago
4
how to create a motif2TF tbl file

#28 shangguandong1996 closed 2 years ago
6
Can I use the bulk ATAC-seq fasta

#27 shangguandong1996 closed 2 years ago
6
Will zebrafish cisTarget databases be available in the future?

#26 yjchen1201 opened 2 years ago
9
How to deal with genes or regions in human unmapped in other species by liftover

#25 yangliu0729 opened 2 years ago
1
How to check which genes are in the database?

#24 linxy29 opened 2 years ago
4
TypeError: write_feather() got an unexpected keyword argument 'compression'

#23 hcph closed 2 years ago
1
Can I use this method to create a cisTarget database for plant?

#22 cheer1104 opened 2 years ago
1
Genes not found in cistarget database

#21 daxus4 closed 2 years ago
2
Can I apply cisTarget to estimate the RBP-regulon?

#20 kerenzhou062 opened 2 years ago
6
Can the input motifs be in the PWM format?

#19 kerenzhou062 opened 2 years ago
3
Cannot create conda environment

#18 daxus4 closed 2 years ago
4
Use tracks

#17 mtxellrb opened 2 years ago
5
pig cisTarget database issues!

#16 Samaneh14 opened 2 years ago
15
Build the Axolotl cisTarget database issue

#15 fengweimin-maker opened 2 years ago
14
pyscenic ctx --annotations_fname: how to generate tbl for new species?

#14 mcsimenc closed 2 years ago
1
cbust error

#13 mcsimenc closed 2 years ago
4
Possible to have example input files?

#12 mcsimenc opened 2 years ago
1
Problem running pySCENIC on custom made motifs

#11 terooatt closed 1 year ago
2
whole-genome rankings

#10 rojinsafavi closed 1 year ago
1
License

#9 asistradition opened 3 years ago
0
Create a zebrafish db: question about the best fasta file

#8 stanaka6 opened 3 years ago
18
create_cistarget_motif_databases issues

#7 huoqiang138 opened 3 years ago
2
feather file doesn't contains 'features' when input into pyscenic

#6 yuyun-zhang closed 3 years ago
6
create the mouse database with an additional motif

#5 tropfenameimer opened 3 years ago
6
build the Gallus gallus cisTarget database issue

#4 honghh2018 opened 3 years ago
10