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aidenlab
/
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
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No wobble dups
#206
nchernia
opened
3 years ago
0
SLURM version
#205
GuangliangGao
closed
2 years ago
6
cpu scripts report "chimeric_blacklist.awk: line 671: function and never defined"
#204
xjtutgb
closed
2 years ago
2
Errorneous message in mega.sh
#203
nchernia
opened
3 years ago
1
hiccups
#202
ningwei-wei
closed
2 years ago
1
Missing of KR matrices and malfunction of addNorm utility
#201
Yonghao-Holden
closed
2 years ago
6
scripts?
#200
ashlingcha
closed
2 years ago
3
whole-genome addNorm running for a very long time
#199
SooLee
closed
2 years ago
5
how to set resolution in hiccups
#198
shiyi-pan
closed
2 years ago
1
postproc step
#197
ryao-mdanderson
closed
2 years ago
8
a missing match quotation mark?
#196
ryao-mdanderson
closed
2 years ago
1
stuck on process to cat files
#195
ryao-mdanderson
closed
2 years ago
3
How to dump the loops from a local .hc file
#194
amsszlh
closed
2 years ago
3
How to solve No reads in Hi-C contact matrices error?
#193
gitcruz
closed
2 years ago
2
Juicer pre create .hic ERROR
#192
henricheng
closed
2 years ago
14
suppress too many args error if host returns >1 line
#191
rmdickson
closed
3 years ago
1
Allow null queue and long_queue
#190
rmdickson
opened
3 years ago
3
"[: too many arguments" if host() returns more than one line
#189
rmdickson
closed
3 years ago
1
Juicer pre create .hic
#188
BenxiaHu
closed
2 years ago
1
Could not read hic file: No enum constant juicebox.windowui.NormalizationType.SCALE
#187
mihuzx
closed
2 years ago
3
convert HiC-Pro contatc matrix to .hic
#186
BenxiaHu
closed
2 years ago
1
generate_site_positions for dnase
#185
apn83
closed
3 years ago
1
isolation score
#184
Nuturetree
closed
2 years ago
1
isolation score
#183
Nuturetree
closed
2 years ago
0
eigenvector can not calculate in high resolution
#182
Nuturetree
closed
3 years ago
4
arrowhead can not to calculation at 20k resolution
#181
Nuturetree
closed
3 years ago
3
HiCCPUS GPU/CUDA Installation Not Detected
#180
brainfo
closed
3 years ago
0
loading .hic to juicebox can not choose the normalization to show it
#179
wbszhu
closed
3 years ago
1
Problem about calculate_map_resolution.sh
#178
QianzhaoJ
closed
4 years ago
4
how to choose the Job scheduling system form LSF,PBS and so on
#177
shiyi-pan
closed
4 years ago
2
Juicer Tools Pre fails to generate KR normalization for a few chromosomes at certain resolutions
#176
tanlongzhi
closed
4 years ago
2
producing raw interaction frequency matrices from .hic
#175
rdali
closed
4 years ago
2
Loop list is empty or incorrect path provided error for APA
#174
awezmm
closed
2 years ago
3
DependencyNeverSatisfied on SLURM cluster
#173
cmonat
closed
4 years ago
4
juicer//scripts/common/collisions_dedup_rearrange_cols.awk:19: fatal: 3 is invalid as number of arguments for asort
#172
forrwill
closed
4 years ago
3
pre
#171
zpliu1126
closed
4 years ago
0
pre does not support multithreaded processing of 4DN-DCIC pairs file
#170
dmalzl
closed
4 years ago
6
help: the step of generating merged_nodups.txt is very slow!
#169
chywish
closed
3 years ago
3
sequence libraries question
#168
longzhangnation
closed
4 years ago
4
dump error
#167
xiaowenchenjax
closed
2 years ago
4
Are eigenvector values from juicer_tools flipped?
#166
awezmm
closed
4 years ago
0
error using DNAse data
#165
stefanscripts
closed
4 years ago
1
Bash error extracting file size.
#164
aakashsur
opened
4 years ago
1
Add arima as a RE choice
#163
nchernia
closed
4 years ago
1
qsub: Unknown resource: AMD
#162
aakashsur
closed
2 years ago
1
Finally move to common/ scripts
#161
nchernia
opened
4 years ago
0
Make BWA a single call
#160
nchernia
closed
4 years ago
1
Updated stats
#159
nchernia
closed
2 years ago
0
Add collisions dedupping code
#158
nchernia
closed
4 years ago
1
Comment is wrong in stats_sub.awk
#157
nchernia
closed
4 years ago
1
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