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aidenlab
/
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
402
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180
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#256
sa501428
closed
2 years ago
0
[Juicer 2.0] Exception in thread "main" java.lang.RuntimeException: Unknown command: statistics
#255
Zojka
closed
2 years ago
9
pull changes of master into encode
#254
sa501428
closed
2 years ago
0
Default branch explanation
#253
Zojka
closed
2 years ago
2
isVoltron should not be a default
#252
Aannaw
opened
2 years ago
2
Pull in changes for ENCODE mega
#251
sa501428
closed
2 years ago
0
Unit of calculate_map_resolution.sh
#250
FarmOmics
closed
2 years ago
1
Encode mega script update
#249
sa501428
closed
2 years ago
0
can not use custom resolution
#248
LinXialab
closed
2 years ago
1
How to merge multiple .hic files
#247
weiwei4396
closed
2 years ago
1
how to read these informations on the dump(data extraction) from .hic documnet
#246
tyewaichung
closed
2 years ago
1
fail
#245
zhypan
closed
2 years ago
1
docker version of juicer
#244
seqyuan
closed
2 years ago
2
Possible issue with restriction fragment assignment or sam_to_pre script
#243
DustinSokolowski
closed
2 years ago
2
awk:fatal:can't open source file
#242
Kai-Maker1
closed
2 years ago
1
AWK bug rounding in script
#241
sa501428
opened
2 years ago
2
Single dedup
#240
nchernia
closed
2 years ago
0
CPU/common/cleanup.sh can unexpectedly modify INPUT fastq files
#239
rsharris
opened
2 years ago
3
Failure in creating .hic file by pre command: java.lang.NumberFormatException: For input string: "chr1"
#238
yuanyuanhe2021
closed
2 years ago
2
Still have problem with cuda installation
#237
Lattesnow
closed
2 years ago
5
Unknown command: LibraryComplexity
#236
edfajardo
closed
2 years ago
6
Question on Merged_nodups.txt
#235
joreynajr
closed
2 years ago
2
Codes for restriction sites of mixed restriction enzymes
#234
bcbanderson
closed
2 years ago
2
juicer_tools NullPointerException at zoom FRAG_20
#233
esebesty
closed
2 years ago
2
Failure during chimera handling
#232
Lattesnow
closed
2 years ago
4
Always get java.lang.RuntimeException: No reads in Hi-C contact matrices. This could be because the MAPQ filter is set too high (-q) or because all reads map to the same fragment.
#231
Lattesnow
closed
2 years ago
12
The problem of juicer_tools.jar
#230
phil622
closed
3 years ago
5
PBS Error allocating memory for add_verify_resources
#229
phil622
closed
3 years ago
7
Single seq
#228
nchernia
closed
3 years ago
0
what's the difference between "unique" and "inferred" folders when using MotifFinder?
#227
hzjsxu
closed
3 years ago
3
Typo in sam_to_mnd
#226
DustinSokolowski
closed
3 years ago
1
CUDA version 9 and above for Hiccup use
#225
yamzaleg
closed
3 years ago
1
collisions.awk does not work for contig names
#224
qisun2
closed
2 years ago
2
v1.22 dump expected
#223
jordrow
closed
2 years ago
1
Integer overflow when creating assembly hic file
#222
maehler
opened
3 years ago
2
Some questions about the input format
#221
biozzq
closed
3 years ago
2
Unknown chromosome error with eigenvector
#220
maryawood
closed
3 years ago
6
fix norm default
#219
sa501428
closed
3 years ago
0
Update changes to calling the jar
#218
sa501428
closed
3 years ago
0
Resolves #216
#217
eernst
closed
3 years ago
0
unix group names with spaces break ls -l | awk in juicer.sh, cleanup.sh, check.sh
#216
eernst
closed
2 years ago
0
Issue with juicer output hic file
#215
iacopogentile
closed
3 years ago
11
PBS juicer no longer has a -j flag
#214
DustinSokolowski
closed
2 years ago
11
Calculate map resolution
#213
Jssmith91
closed
2 years ago
9
juicer_tools.jar dump creates a dense matrix bigger than the requested limits
#212
jazberna1
closed
2 years ago
1
GPUs are not installed so HiCCUPs cannot be run
#211
yuan102379
closed
3 years ago
4
AWS image ami-458fc22f does not exist
#210
ArielPaulson
closed
3 years ago
3
O/E data not available
#209
YuhaoDoong
closed
2 years ago
5
bug in "chimeric_nonsites.awk" script in the PBS version of juicer.
#208
DustinSokolowski
closed
3 years ago
2
SLURM script
#207
PopGenHamburg
closed
2 years ago
8
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