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aidenlab
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juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
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sort: write failed: /home/sdc/3ddna/HIC_tmp/sorty4gvbq: Input/output error
#302
Biscuite-wzy
opened
1 year ago
0
Calulate_map_resolution.sh issue
#301
aminakur
opened
1 year ago
7
empty heatmap
#300
GaoChengyu
closed
1 year ago
0
Nothing happened
#299
jlchen5
closed
1 year ago
0
"bwa -mem SP5M" error
#298
woaishiye
opened
1 year ago
1
java out of memory error when running juicer_tools apa on server
#297
bioinfo89
opened
1 year ago
2
Missing merged loops HiCCUPs output
#296
ericmalekos
opened
1 year ago
1
Failure during chimera handling of ...
#295
antarikshtyagi
opened
1 year ago
4
aligned/merged1.txt does not exist or does not contain any reads.
#294
1580542426
closed
1 year ago
7
chimeric_sam.awk not work
#293
jiangshan529
opened
1 year ago
1
log4j vulnerability in jar files
#292
annashcherbina
opened
1 year ago
0
Juicer does not produce results (eg. merged_nodups.txt)
#291
Biscuite-wzy
opened
1 year ago
10
Alignment failed
#290
cherryDAP
opened
1 year ago
3
juicer version for Snakemake?
#289
michalogit
opened
1 year ago
2
Use bwa-mem2 mem to accelerate the pipeline
#288
tinyfallen
opened
1 year ago
1
No files in the split folder and the basename problem
#287
ala98412
closed
1 year ago
1
Provide default value to --threads
#286
adadiehl
closed
2 years ago
0
java error while running juicer on cluster
#285
BijalThakkar
opened
2 years ago
2
How to input the eigenvertor result into the juicebox to visualization.
#284
phil622
opened
2 years ago
3
If I want to get hic data(hic data after mega.sh merges duplicate samples) at other resolutions , do I need to start the analysis from fq data again?
#283
shenlinyong
opened
2 years ago
0
Update juicer_postprocessing.sh
#282
adadiehl
closed
2 years ago
2
Take long time to generate .hic file
#281
starnight0
opened
2 years ago
1
fatal: cannot open source file `/public/home/qczhang/WSY/juicer/scripts/common/chimeric_blacklist.awk' for reading: No such file or directory
#280
fire-activate
closed
2 years ago
3
Chromosome combination error in mega.sh
#279
kellyliyichen
opened
2 years ago
2
merge: invalid option -- 'c'
#278
worldxiao
opened
2 years ago
2
Update juicer.sh
#277
jelber2
opened
2 years ago
0
mega.sh
#276
shenlinyong
opened
2 years ago
0
Force maximum value for APA color scale
#275
ArielPaulson
opened
2 years ago
0
how use juicer to produce a matrix file like this
#274
ZQY19960810
closed
2 years ago
3
problem with Running on already aligned files
#273
mycecilia
opened
2 years ago
2
statistics of hic contacts in inter.txt looks abnormal
#272
JiaoLaboratory
opened
2 years ago
1
Dups/no dups error
#271
tonyjhlam
closed
2 years ago
2
Creating .hic from bedpe using Pre
#270
cgirardot
closed
2 years ago
3
[-d topDir] argument is not passed correctly to -i argument for postprocessing
#269
Norbittner
opened
2 years ago
1
$splitdir/*res.txt does not exist when running mega_from_bams.sh
#268
pna059
closed
2 years ago
3
juicer v1.6 SLURM version
#267
Aannaw
opened
2 years ago
0
Straw successfully dumps data, but juicer_tools.jar fails
#266
ArielPaulson
closed
2 years ago
3
Juicer align does not wait for splitting to finish
#265
dmacguigan
opened
2 years ago
0
`-g` argument not getting passed to `juicer_postprocessing.sh`
#264
agilly
opened
2 years ago
2
`statistics` not found, and cannot resume at step "afterdedup"
#263
agilly
opened
2 years ago
12
CPU mega.sh issues (quotation in sort / merge-stats / cryptic message)
#262
rdacemel
closed
2 years ago
7
syntax errors in `chimeric_sam.awk`, cannot resume using `-S chimeric`
#261
agilly
closed
2 years ago
7
Merge Olga's changes
#260
sa501428
opened
2 years ago
0
Encode mega
#259
sa501428
closed
2 years ago
0
Mega updates
#258
sa501428
closed
2 years ago
0
Fix encode mega stats
#257
sa501428
closed
2 years ago
0
Pull changes
#256
sa501428
closed
2 years ago
0
[Juicer 2.0] Exception in thread "main" java.lang.RuntimeException: Unknown command: statistics
#255
Zojka
closed
2 years ago
9
pull changes of master into encode
#254
sa501428
closed
2 years ago
0
Default branch explanation
#253
Zojka
closed
2 years ago
2
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