issues
search
aineniamh
/
snipit
snipit: summarise snps relative to your reference sequence
GNU General Public License v3.0
141
stars
28
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
snipit --flip-vertical feature not working as intended
#45
clmattson
opened
1 week ago
0
code request
#44
Aria-Dolatabadian
opened
4 weeks ago
1
Install via Conda?
#43
AntonioBaeza
opened
1 month ago
0
Snipit on a.acids
#42
woguta
closed
1 month ago
4
snipit 1.1.2
#41
antoine4ucsd
closed
1 month ago
3
Can the graph be directly drawn through the reference sequence and VCF file?
#40
jiee1993
opened
5 months ago
0
adding no text option
#39
aineniamh
closed
5 months ago
0
aa merge in
#38
aineniamh
closed
5 months ago
2
merge in main to branch
#37
aineniamh
closed
5 months ago
0
Update to readme
#36
ammaraziz
closed
5 months ago
0
Can we plot like this?
#35
liamxg
opened
6 months ago
4
Option to remove the SNP base and coordinate text from image?
#34
mlo89
closed
5 months ago
4
Support for amino acids, correct ambiguous handling
#33
ammaraziz
closed
5 months ago
8
Citation
#32
nsmt89
closed
5 months ago
1
Image size of 127348x38612 pixels is too large.
#31
liamxg
closed
6 months ago
0
Suggestion: Writing out SNPs of a specific region in CSV file
#30
JoseJimenezG31
opened
1 year ago
1
feat: exclude snps only present in one sequence (uninformative)
#29
corneliusroemer
closed
5 months ago
1
Coloring reference bases in --recombi-mode
#28
ktmeaton
closed
9 months ago
2
Licenses put/patch bug
#27
fabl96
closed
1 year ago
0
snipit for amino acid
#26
antoine4ucsd
closed
5 months ago
2
v1.1.2 issues
#25
wm75
opened
1 year ago
1
Adjust sorting by mutations to new snp format
#24
wm75
closed
1 year ago
2
Indel dev
#23
aineniamh
closed
1 year ago
0
Indel dev
#22
aineniamh
closed
1 year ago
0
merge main to dev branch
#21
aineniamh
closed
1 year ago
0
Suggestion: Export option as .tsv or .csv !!
#20
Rezwanuzzaman
closed
2 years ago
1
Suggestion: reformat the code with black
#19
terrycojones
closed
1 year ago
0
Added Recombination Mode
#18
Desperate-Dan
closed
2 years ago
0
END: Make background transparency an option, rather than forcing it
#17
corneliusroemer
closed
2 years ago
2
BUG: Release 1.0.4 on pypa seems to be an outdated code base
#16
corneliusroemer
closed
2 years ago
3
Add options to sort by sequence name and mutations at provided positions
#15
corneliusroemer
closed
2 years ago
0
ENH: Add option to sort by presence/absence of mutations at certain positions
#14
corneliusroemer
closed
2 years ago
1
Suggestion: ability to order sequences according to a file
#13
iahdb
closed
2 years ago
1
Error: name not a column name in label.csv
#12
rebeelouise
closed
2 years ago
6
Suggestion: enhancements to show possible effects on protein
#11
martinmchugh
opened
2 years ago
1
pip install snipit missing latest parameters displayed on github repo
#10
rebeelouise
closed
2 years ago
4
Added option to visualise indels in the snipit plot
#9
charlesfoster
closed
2 years ago
1
Error about: "UnboundLocalError: local variable 'top_polygon' referenced before assignment"
#8
sbridgett
closed
1 year ago
4
Suggestion: show coordinates in reference sequence
#7
pmenzel
opened
3 years ago
1
Option to sort sequences in output graphic by SNP count
#6
matt-sd-watson
closed
3 years ago
1
ModuleNotFoundError: No module named 'snp_functions'
#5
Pepaflores56
closed
3 years ago
1
change '--ignore-positions' to include/exclude ranges
#4
tomkinsc
closed
3 years ago
2
Plans for Bioconda?
#3
rpetit3
closed
3 years ago
2
add position ignore
#2
tomkinsc
closed
3 years ago
1
add "--flip-vertical" argument to flip Y axis so sequences appear below reference
#1
tomkinsc
closed
3 years ago
1