almaan stereoscope issues

almaan / stereoscope

Spatial mapping of cell types by integration of transcriptomics data

MIT License

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issues

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Error when running stereoscope ...

#41 ineskrd opened 5 months ago
0
Calculation/Prepation for the First Column of Spatial Transcriptomics (ST) Count Data File

#40 kevin-de-granta opened 8 months ago
0
stereoscope test occurred error

#39 DINGQIA opened 9 months ago
0
How to choose a right batch size?

#38 yunbokai opened 1 year ago
0
How can I get the top genes for a celltype?

#37 jemorlanes opened 1 year ago
2
Would stereoscope look be compatible with barcode of 10X visium?

#36 QuinceyLv closed 1 year ago
0
RUN ERROR：One or more of the specified paths to the sc data does not exist

#35 yunbokai opened 1 year ago
0
stereoscope test Error

#34 yunbokai opened 1 year ago
2
How to map all the cell type in a single visium slide

#33 AkilaRanjith opened 1 year ago
0
Bump numpy from 1.21.0 to 1.22.0

#32 dependabot[bot] opened 2 years ago
0
running the stereoscope command for method comparison is throwing some error

#31 Shrabanti87 opened 2 years ago
10
test error

#30 linhuawang opened 2 years ago
1
Recycling sc models

#29 johnyaku opened 2 years ago
0
Number of cores/threads

#28 kdragicevic opened 2 years ago
1
Error : TypeError: '<' not supported between instances of 'int' and 'str'

#27 bomacchih closed 3 years ago
15
counts of gene g at spot s from cell c?

#26 gorkemkose opened 3 years ago
2
Top n criteria and some other things

#25 jfnavarro opened 3 years ago
1
Strategy for selections of genes

#24 jfnavarro opened 3 years ago
4
Exclude spots not covered by the tissue

#23 jiazhao97 opened 3 years ago
0
Running Stereoscope- SC data format error?

#22 Roopali24 closed 3 years ago
1
Error while running ./setup.py install --user

#21 Roopali24 closed 3 years ago
5
installing and test question

#20 caiquanyou closed 3 years ago
7
fix h5ad

#19 giovp closed 3 years ago
0
Interaction with AnnData

#18 romain-lopez opened 3 years ago
6
gpu utilization

#17 giovp opened 3 years ago
0
--silent_mode still prints output

#16 giovp opened 3 years ago
2
Metric for co-ocurrence of cells within ST Visium spots

#15 cartal closed 3 years ago
2
Is ok when integrating scRNA-seq dataset from Hippocampal region and ST dataset from mouse brain？

#14 jiawei-zhong closed 3 years ago
3
A threshold to remove the cell type with low proportion

#13 jiawei-zhong closed 3 years ago
2
how does stereoscope eventually deceide the input genes

#12 BioAmelie closed 3 years ago
7
the meaning of output files

#11 BioAmelie closed 3 years ago
5
make package pip installable

#10 giovp closed 3 years ago
3
mouse-st-data.zip data need password

#9 BioAmelie closed 3 years ago
15
H5AD Sparse Matrix Support

#8 nik1sto closed 4 years ago
5
Syntax Error stsc/datasets.py

#7 nik1sto closed 4 years ago
2
Bugfix in Utils

#6 nik1sto closed 4 years ago
2
Setup numba didn't work

#5 nik1sto closed 4 years ago
2
anndata support?

#4 giovp closed 4 years ago
2
Plotting `stereoscope` results

#3 cartal closed 4 years ago
2
ValueError: could not convert string to float: 'AAACAAGTATCTCCCA-1'

#2 cartal closed 4 years ago
4
Time and usage for Visium data

#1 giovp closed 4 years ago
1