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RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
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DBG construction from short and long reads
#81
SimonHegele
opened
5 days ago
2
About multi-tissue assembly
#80
YIGUIz
opened
2 weeks ago
6
Containerized rnabloom returning "Unsupported file format detected" error for fastq.gz files when used with Nextflow
#79
tonyaseverson
closed
1 month ago
2
Error assembling long read PacBio, no overlaps
#78
A-pcd
opened
1 month ago
3
Best practices for pre-processing prior to assembly
#77
patrickaoude
opened
1 month ago
6
Long reads genome guided
#76
sagnikbanerjee15
opened
2 months ago
1
is the assembly deterministic?
#75
alexyfyf
closed
2 months ago
3
Improving Sensitivity for Similar Isoform Assembly and Handling PacBio HiFi RNA Reads Without Polishing
#74
zhenyu7500
closed
3 months ago
3
assembling nanopore sequenced bacterial transcriptomes
#73
bioinfo17
opened
4 months ago
1
error in assembling ONT DRS long reads
#72
nmrt-sahu
opened
4 months ago
1
reduce redundancy in direct RNA long-read only assembly?
#71
mjudd8
opened
5 months ago
1
Consensus transcriptome de novo with multiple samples
#70
nriareal
opened
5 months ago
1
RAM requirements. What is the minimum?
#69
nriareal
closed
1 month ago
2
Question about assemble long-read sequencing data with short-read polishing
#68
huawen-poppy
opened
7 months ago
3
Can output be used for DE analysis?
#67
kzudock
closed
8 months ago
2
Resolve Racon Conflict with Numeric Named Reads
#66
ad3002
opened
8 months ago
3
question about the output
#65
huawen-poppy
closed
7 months ago
2
can rnabloom run from stage 3?
#64
huawen-poppy
closed
10 months ago
2
Errors (reading file and I/O) for one of 9 pooled assemblies
#63
tonyaseverson
closed
10 months ago
11
RNABloom not creating transcriptome files
#62
dvirdi01
closed
1 month ago
3
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
#61
nityendra21
closed
11 months ago
4
Java out of memory exception
#60
dvirdi01
closed
1 month ago
3
Inputting multiple long-read files at once
#59
dvirdi01
closed
1 month ago
3
conda install url not working
#58
dvirdi01
closed
1 year ago
1
Transcriptome assembly from ONT direct RNA sequencing seems to be incomplete
#57
OliviaAgatha
closed
1 month ago
9
Q. Error in extracting unique reads at Stage 3 (Assembling long reads for "rnabloom")
#56
alexander-ahn
closed
1 year ago
4
Improve hairpin/palindrome removal in long-read assembly
#55
kmnip
opened
1 year ago
0
Output error message for pooled assembly of single-end reads
#54
kmnip
opened
1 year ago
0
questions about how to get genes from the output
#53
alexyfyf
opened
1 year ago
4
RNA-Bloom2 version
#52
ARW-UBT
closed
1 year ago
1
Feature request: long-read reference-guided assembly
#51
oneillkza
opened
1 year ago
0
ERROR: Error during redundancy reduction!
#50
xiekunwhy
closed
1 month ago
1
Problem parsing fasta file
#49
JC-therea
closed
2 years ago
3
RNA-Bloom Generates Empty FASTA Without Error
#48
schorlton
closed
1 year ago
8
Feature Request: More verbose logging?
#47
schorlton
closed
1 year ago
1
Transcript headers follow different formats
#46
schorlton
closed
1 year ago
3
Fix bug when read names contain `/`
#45
kmnip
closed
1 year ago
0
ERROR: Incorrect FASTA header format
#44
schorlton
closed
2 years ago
1
ERROR: For input string: "9223372036854775808"
#43
schorlton
closed
1 year ago
6
ERROR: Infinite or NaN
#42
schorlton
closed
2 years ago
5
We really need to keep E0.L. sequence?
#41
xiekunwhy
closed
2 years ago
3
Release memory before redundancy reducing step.
#40
xiekunwhy
closed
2 years ago
5
java.lang.RuntimeException: java.lang.StringIndexOutOfBoundsException: String index out of range: -1
#39
xiekunwhy
closed
2 years ago
9
instruction about the output file
#38
zhaocheng3326
closed
2 years ago
1
Assemble multipple bulk RNA samples
#37
xiekunwhy
closed
2 years ago
3
Improved README: Add output files description
#36
Ebedthan
closed
2 years ago
2
How to restart a failed run
#35
jesgomez
closed
1 year ago
1
3'UTR transgene identification from 10x scRNAseq reads
#34
auesro
closed
2 years ago
36
FastQ gzipped files not accepted as input?
#33
auesro
closed
2 years ago
8
How to remove the isoform in the trasncript.fa file?
#20
mathavanpu
closed
1 year ago
3
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