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biod
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sambamba
Tools for working with SAM/BAM data
http://thebird.nl/blog/D_Dragon.html
GNU General Public License v2.0
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sambamba markdup stuck in the finding positions of the duplicate reads in the file...
#519
xiechangxiao
opened
2 weeks ago
0
Compile binary with ldc 1.38.0
#518
corneliusroemer
opened
3 weeks ago
0
sambamba (v. 0.8.0) sort: exit code 271
#517
jeffreycyyu
opened
2 months ago
0
sambamba-sort: index [1] exceeds array of length 1
#516
Bio-Quest
opened
3 months ago
0
Sambamba slice - 94 Segmentation fault (core dumped)
#515
alexvasilikop
opened
5 months ago
2
mpileup fail to execute bin/sh
#514
Axze-rgb
opened
8 months ago
0
sambamba slice piped with sambamba view is having runtime problem when running in parallel
#513
yangyxt
opened
9 months ago
0
problem of deduplication
#512
crazysummerW
opened
10 months ago
0
Support removal of duplicates for paired-end reads
#511
rikrdo89
opened
10 months ago
0
Difference of depth/mean coverage calculation among sambamba, bedtools, and mosdepth in high coverage panel data
#510
ipstone
opened
10 months ago
0
sambamba-markdup:(No space left on device)
#509
weirdo-onlooker
opened
10 months ago
1
chore: remove travis config
#508
chenrui333
closed
11 months ago
1
sambamba 1.0.1 build failure
#507
chenrui333
closed
11 months ago
4
Sambamba subsample produces truncated BAMs
#506
Sven-Winter
opened
1 year ago
0
Sambamba depth output repeats positions!
#505
Sven-Winter
opened
1 year ago
0
provide an example of pipping sambamba in documentation
#504
DrRLS
closed
11 months ago
1
conda sambamba 1.0 is running slower than conda sambamba 0.6
#503
ericpanyc
closed
11 months ago
1
porting from old sambamba/BioD
#502
RichardCorbett
closed
11 months ago
1
sambamba-markdup: Range violation
#501
Cynthia1012
opened
1 year ago
2
Minor subversion number missing in 1.0 release
#500
Stikus
closed
1 year ago
3
Can you add sort by tag function?
#499
cherryamme
opened
1 year ago
1
extends past source array of length 131072
#498
charliechen912ilovbash
opened
1 year ago
0
Test suite error on Debian unstable
#497
tillea
closed
1 year ago
4
Add CI config for Github Actions
#496
martin-g
closed
1 year ago
2
Updates readme grammar, spelling, markdown
#495
nikoandpiko
closed
1 year ago
1
sambamba depth region function add median value
#494
tamadezhenshiyuncai
closed
1 year ago
1
Fixed a typo
#493
samsonjm
closed
1 year ago
0
sambamba depth region: Segmentation fault (core dumped)
#492
QichenFU
opened
2 years ago
0
depth region -L for multiple bam
#491
yuanjianwen-gif
opened
2 years ago
0
Why does `sambamba sort` give me a different sort order across multiple runs (on the same BAM file)? Isn't `sort` by coordinates determinstic?
#490
etrh
closed
1 year ago
2
Feature request: fixmate like samtools
#489
kaji331
opened
2 years ago
1
Feature request: Slice BAM file by query name
#488
yangyxt
opened
2 years ago
1
can sambamba markdup give duprate concrete number?
#487
asmlgkj
opened
2 years ago
0
sambamba --version's output doubled
#486
kim-fehl
opened
2 years ago
1
`Samtools + libdeflate` out performs `sambamba` on a single thread
#485
mebbert
opened
2 years ago
3
Sambamba has remaining references to libbiod
#484
tillea
closed
2 years ago
9
markdup - segmentation fault
#483
BioinfoRDX
closed
2 years ago
1
Cannot build 0.8.1 with Guix
#482
rekado
closed
2 years ago
7
do you support aggregation and dedup in one command?
#481
AlisaGU
closed
2 years ago
3
Made compile with removed alias this in Nullable
#480
dukc
closed
2 years ago
3
Support filtering of absolute template length
#479
tolot27
closed
11 months ago
2
Fix build when GCC is not installed
#478
stephank
closed
3 years ago
1
sambamba -F "not duplicate" processed bam still have duplicated marked by sambamba markdup
#477
piyushjo15
closed
3 years ago
2
sambamba-markdup: Unexpected '-' when converting from type string to type ulong
#476
ls233
opened
3 years ago
1
sambamba markdup: Unable to write to stream
#475
sklages
closed
2 years ago
1
Inaccessible google groups support forum
#474
Poshi
closed
3 years ago
2
Compiling from source v.0.8.0 fails
#473
nadyawilliams
closed
3 years ago
2
MultiQC support for sambamba markdup
#472
gartician
closed
3 years ago
3
downsampling by sambamba with seed
#471
dulunar
opened
3 years ago
1
sambamba merge using too much memory
#470
Poshi
closed
3 years ago
1
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