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biod
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sambamba
Tools for working with SAM/BAM data
http://thebird.nl/blog/D_Dragon.html
GNU General Public License v2.0
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add missing standard SAM header tags
#468
tolot27
closed
3 years ago
1
depth error
#467
Masaru-iehisa
opened
3 years ago
0
Is it necessary to sort bam files by read names before markdup?
#466
xiekunwhy
opened
3 years ago
0
could not make sambamba-ldmd2-64
#465
An1e
closed
2 years ago
1
Sambamba should be able to convert SAM->BAM and sort at the same time like samtools
#464
moldach
closed
3 years ago
1
sambamba markdup deadlock in Ubuntu 14.04
#463
dulunar
opened
3 years ago
3
additional header columns are removed
#462
tolot27
closed
3 years ago
1
markduplicate's result still differs from picard
#461
xiucz
closed
3 years ago
1
Fix meson build
#460
pjotrp
closed
2 years ago
1
Make install error
#459
Stikus
closed
2 years ago
2
Sambamba depth -q error
#458
MatthieuBeukers
opened
3 years ago
2
Sambamba depth tools does not report softclipped bases
#457
robinpaul85
closed
3 years ago
0
sambamba depth -m
#456
aledj2
closed
3 years ago
1
Differences in output between depth region -m (v0.6.5 and v0.7.1)
#455
RachelDuffin
closed
3 years ago
1
Update INSTALL.md
#454
samsonjm
closed
3 years ago
1
sambamba sort error with sambamba-0.7.1-linux-static
#453
WellJoea
closed
3 years ago
2
option not to print warning messages (eg re overlapping mates)
#452
aledj2
closed
3 years ago
3
Limiting ram usage in merge?
#451
ghost
closed
3 years ago
1
Feature request: Build sambamba with libdeflate
#450
rhpvorderman
closed
3 years ago
3
Sambamba not running in OSX Catalina
#449
juulluu21
closed
3 years ago
2
gold linker with guix ignores rpath
#448
pjotrp
closed
3 years ago
1
Sambamba sort is inefficient compared to samtools.
#447
rhpvorderman
closed
4 years ago
2
exclude softclipped bases from the reported depth
#446
aledj2
closed
3 years ago
2
sambamba depth output coordinate system
#445
tahuh
closed
3 years ago
2
Filtering out reads with not and 2 conditions
#444
paulstretenowich
closed
3 years ago
1
Cram format support
#443
jjfarrell
closed
4 years ago
2
sambamba: symbol lookup error
#442
mbk0asis
closed
3 years ago
1
compilation error: no identifier for declarator Usage
#441
adily777
closed
4 years ago
3
Too many files for merge
#440
sainadfensi
closed
4 years ago
2
Memory issue with Sambamba markdup
#439
psur9757
closed
3 years ago
0
Installation issue with BioD
#438
hildebs42
closed
3 years ago
0
Compilation issue on HPC
#437
moldach
closed
4 years ago
10
sambamba-view: Unexpected '_' when converting from type string to type uint
#436
HYan-lei
closed
4 years ago
1
sambamba merge with stdout not working
#435
nh13
closed
4 years ago
1
Installation issue where is the executable now?
#434
moldach
closed
4 years ago
1
sambamba-depth: couldn't open file
#433
linelieblein
closed
3 years ago
2
Discrepancy between samtools depth and Sambamba region
#432
wynstep
closed
3 years ago
2
sambamba-view error with pacbio SAM files
#431
elcortegano
closed
4 years ago
1
sambamba validate does not produce output
#430
elcortegano
closed
4 years ago
1
Merge sometimes hangs and never merges
#429
calizilla
closed
4 years ago
3
bug when downsampling twice with the same seed
#428
isthisthat
closed
3 years ago
3
markdup: Barcode-aware duplicate marking
#427
pontushojer
closed
3 years ago
2
sambamba depth window -L region support
#426
isthisthat
closed
3 years ago
1
Sambamba with htslib 1.10.2
#425
bioinfornatics
closed
3 years ago
4
Incompatible with OSX Catalina
#424
danielecook
closed
3 years ago
5
Discrepancy between sambamba and samtools
#423
sybrohee
closed
3 years ago
2
Please port tools and test suite to Python3
#422
tillea
closed
3 years ago
2
sambamba-markdup: not enough data in stream via /dev/stdin
#421
heuermh
opened
4 years ago
15
Fix GNU Guix install instructions
#420
mschilli87
closed
4 years ago
1
Add Meson build definition
#419
ximion
closed
4 years ago
0
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