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biod
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sambamba
Tools for working with SAM/BAM data
http://thebird.nl/blog/D_Dragon.html
GNU General Public License v2.0
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Add Meson build definition
#419
ximion
closed
4 years ago
0
Always use Python 3+
#418
ximion
closed
4 years ago
2
bed file input for sambamba dept filter outputing unrequested position?
#417
duartemolha
closed
3 years ago
2
Error: undefined identifier
#416
kalon33
closed
3 years ago
3
Feature request: absolute value operator in filter statements
#415
tzuni
closed
3 years ago
1
Select index file
#414
oyvinev
closed
4 years ago
0
Carrying a sort without reaction
#413
chenji333
closed
4 years ago
0
Sambamba seems not to work with GNU parallel
#412
Rohit-Satyam
closed
4 years ago
7
make error message more informative
#411
EwaMarek
closed
4 years ago
1
filtering uniquely mapped reads results in odd number of reads in PE data
#410
rikrdo89
closed
3 years ago
1
Negative pattern matching syntax for filters
#409
rikrdo89
closed
4 years ago
1
core dump sambamba depth
#408
ghost
closed
4 years ago
4
Simple question regarding sambamba depth
#407
ghost
closed
4 years ago
0
sambamba depth region -L <(expression) bam segfaults
#406
isthisthat
opened
4 years ago
10
sambamba-markdup: [zlib] buf error
#405
Fangzheng16
closed
4 years ago
0
Add option to output in csv format
#404
SichongP
closed
3 years ago
4
sambamba-sort - Too many open files
#403
msubirana
closed
4 years ago
1
Broken pipe
#402
msubirana
closed
5 years ago
1
proper_pair not the same as -f 0x2
#401
mictadlo
closed
4 years ago
0
testSliceMultipleRegionsBed fails
#400
pjotrp
closed
4 years ago
5
Compile Sambamba with DIP1000
#399
pjotrp
closed
3 years ago
2
CRAM documentation
#398
Poshi
closed
5 years ago
1
The latest 0.6.9 release still required the submodule biod/undeaD but it doesn't exist
#397
twhitehead
closed
5 years ago
3
return 1 on error
#396
joelmartin
closed
5 years ago
1
sambamba depth window sementation fault [core dump] using --combined flag
#395
iamh2o
closed
5 years ago
1
Can not run MarkDup for very large bam file
#394
liujiayi771
closed
4 years ago
15
markdup segmentation fault
#393
ZhifeiLuo
closed
4 years ago
66
Subsampling with sambmaba produces wrong number of reads
#392
nFursova
closed
5 years ago
4
Slice test case fails
#391
pjotrp
closed
4 years ago
1
Sambamba + BioD + GSoC idea
#390
heuermh
closed
5 years ago
3
Article: a comparison of 3 programming languages
#389
andre2007
closed
5 years ago
4
issue on CRAM: can't resolve www.ebi.ac.uk:80: System error
#388
dolittle007
closed
4 years ago
3
FASTA indexing and slicing functionalities
#387
NickRoz1
closed
4 years ago
7
install- dyld: Library not loaded
#386
sambamba
closed
5 years ago
1
some bam files from 'sambamba markdup' failed in 'samtools stats'
#385
zhangrengang
closed
5 years ago
1
sort by read names merge (sort -n)
#384
suluxan
closed
4 years ago
1
Add tests for the new '--match-mates' sort option
#383
emi80
closed
5 years ago
1
Use different test frame work
#382
pjotrp
closed
3 years ago
1
sambamba-sort error sometimes
#381
Biometeor
closed
5 years ago
1
Add a new sorting option to pull together mates when sorting by read name
#380
emi80
closed
5 years ago
1
Add a new sorting method to set mates of the same alignment adjacent as required by RSEM
#379
emi80
closed
5 years ago
3
requesting clarification / documentation issue?
#378
cmeesters
closed
4 years ago
2
sambamba depth -- open too many files
#377
YPGG1234
closed
5 years ago
2
sambamba-markdup: not enough data in stream
#376
ghost
closed
4 years ago
1
Fix subsample command description typo in main.d
#375
emi80
closed
5 years ago
0
Add fasta indexing and slicing functionalities
#374
emi80
closed
5 years ago
3
Makefile.docker requires ldmd2 to be installed locally
#373
fwip
closed
4 years ago
3
Update sambamba documentation
#372
pjotrp
closed
3 years ago
1
Fixed tmpdir for sambamba merge
#371
ckuenne
closed
5 years ago
2
Adding query name sorting as in Picard
#370
TimurIs
closed
5 years ago
1
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