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cartography
Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2
https://doi.org/10.1101/2024.02.07.579374
MIT License
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Use variation of information
#27
huddlej
closed
1 year ago
0
adding indel tests to hamming distance method
#26
huddlej
closed
1 year ago
2
Cluster specific mutations
#25
huddlej
closed
1 year ago
1
Refine scatterplot aesthetics
#24
huddlej
closed
1 year ago
0
Add simulations
#23
huddlej
closed
1 year ago
0
Implement unified workflow
#22
huddlej
closed
2 years ago
0
Using MCC from TreeKnit
#21
nandsra21
closed
2 years ago
2
Calculating hamming distance requires uppercase fasta
#20
cassiawag
closed
2 years ago
1
Update main README to add developers section
#19
nandsra21
closed
2 years ago
1
Add all gridsearch figures to main github
#18
nandsra21
closed
2 years ago
0
Change all snakefiles to use new pathogen-embed package instead of embed script
#17
nandsra21
closed
2 years ago
0
Add Gridsearches from the main repos to github for faster workflows
#16
nandsra21
closed
2 years ago
0
Documentation
#15
nandsra21
closed
2 years ago
0
Create an MCC_by_mds_parameters graph
#14
nandsra21
closed
2 years ago
3
Issue with CSS In Index.html in the docs folder
#13
nandsra21
closed
2 years ago
1
Refine aesthetics of multi-panel scatterplot figures
#12
huddlej
closed
2 years ago
1
Compare MDS in flu with 2 vs 4 components in grid search
#11
huddlej
closed
2 years ago
1
Add clade membership to interactive plot tooltips
#10
huddlej
closed
2 years ago
1
Manually assign better seasonal flu clade colors
#9
huddlej
closed
2 years ago
3
Fix 2018-2020 seasonal flu workflow
#8
huddlej
closed
2 years ago
1
Outlier Analysis Error
#7
nandsra21
closed
7 months ago
0
Wildcard error with seasonal-flu snakefile
#6
nandsra21
closed
3 years ago
1
Cite RF-Net papers
#5
huddlej
closed
7 months ago
0
Implement exhaustive grid search and cross-validation with Snakemake's paramspace interface
#4
huddlej
closed
3 years ago
0
Revision 2020 04 19
#3
huddlej
closed
4 years ago
0
[Do not merge] Review of first draft of cartography manuscript
#2
huddlej
closed
4 years ago
0
Resolves inconsistencies with conda environment creation
#1
huddlej
closed
4 years ago
0
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