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transrate
Understand your transcriptome assembly
http://hibberdlab.com/transrate
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Install transrate in docker image of ubuntu 16.04 / salmon:0.4 error
#203
chklopp
closed
7 years ago
2
Dependencies are missing: - salmon (0.6.0)
#202
brunolouro
opened
7 years ago
17
Transrate's salmon parameters associated with "missing" mapped reads mystery
#201
eeflynn
opened
8 years ago
4
Error in snap beta installation
#200
lplough
opened
8 years ago
2
long time to calculate read diagnostics
#199
dcopetti
opened
8 years ago
2
SNAP seed size
#198
alephreish
opened
8 years ago
2
Link to CITATION.md in README
#197
blahah
closed
8 years ago
0
Update citation to Genome Research paper
#196
blahah
closed
8 years ago
0
Read Diagnostics, SNAP failing
#195
JakeGoodall
closed
8 years ago
1
Installing dependencies with version 1.0.3
#194
abshah
closed
8 years ago
1
Relative pathing doesn't work
#193
Jorisvansteenbrugge
closed
8 years ago
1
Example command doesn't work
#192
simonvh
closed
8 years ago
2
Possible fix for indexing issue. Was failing to increase locationSiz…
#191
jorvis
closed
8 years ago
1
SNAP failed
#190
jwidmann
closed
8 years ago
7
Transcriptome too large?
#189
jorvis
closed
8 years ago
20
File paths must be absolute
#188
jorvis
closed
8 years ago
2
--install-deps help message is annoyingly wrong
#187
ctb
closed
8 years ago
3
1.02 downloaded transrate install runs in install directory, not working directory.
#186
ctb
closed
8 years ago
2
transrate stuck in "Calculating comparative metrics" step
#185
IdoBar
opened
8 years ago
9
transrate "stuck"?
#184
sjannielefevre
closed
8 years ago
8
too many 'real' transcripts filtered
#183
macmanes
opened
8 years ago
1
undefined method `length' for nil:NilClass (NoMethodError)
#182
johnsolk
closed
8 years ago
1
Packaging in salmon (on OSX 10.10.5)
#181
AndrewIrwin
closed
8 years ago
11
Record citations somewhere
#180
blahah
opened
8 years ago
0
add description for contigs segmented
#179
macmanes
closed
8 years ago
0
make p_bad_mappings
#178
macmanes
closed
8 years ago
4
Handle symbolic links to transrate wrapper
#177
roryk
closed
8 years ago
4
users confused about metrics to report - write clear guide
#176
blahah
opened
8 years ago
0
transrate --merge-assemblies option shows error
#175
sarangian
closed
8 years ago
4
snap-aligner running single-threaded instead of multi-threaded
#174
KhudyakovLab
closed
8 years ago
2
we're always passing a fastq
#173
macmanes
opened
8 years ago
5
suggested sed to fix assembly fasta header does not work
#172
johnsolk
closed
8 years ago
1
Account for heterogeneity of the sample by using background distribution of edit distance
#171
blahah
opened
8 years ago
0
Use reference distribution comparison in numerical tests
#170
blahah
opened
8 years ago
0
Other code coverage metrics
#169
blahah
opened
8 years ago
0
in 1.0.1, passing in a .gz assembly yields a strange error
#168
ctb
closed
8 years ago
2
support for single-end reads for read mapping metrics
#167
wfaalajr
closed
8 years ago
2
Allow disabling or caching of contig metrics calculation
#166
ctb
opened
8 years ago
1
snap link is broken in metrics documentation
#165
ctb
closed
8 years ago
0
Installation docs out-of-date wrt --install-deps
#164
ctb
closed
8 years ago
10
allow gzipped reference
#163
macmanes
opened
8 years ago
2
interleaved reads
#162
macmanes
opened
8 years ago
9
Unmatched read ID error message
#161
cboursnell
closed
8 years ago
0
transrate Debian packaging
#160
mr-c
opened
8 years ago
16
license for transrate-tools?
#159
mr-c
closed
8 years ago
1
Transrate and how the number of contigs with an ORF is defined
#158
amabdelhaliem
closed
4 years ago
2
snap fails on files without an fq/fa suffix
#157
camillescott
opened
9 years ago
3
fix problem with install-deps options
#156
cboursnell
closed
9 years ago
0
similar score, very different assembly
#155
macmanes
opened
9 years ago
8
Merge and cufflinks
#154
colindaven
closed
9 years ago
2
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