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brainglobe
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brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
BSD 3-Clause "New" or "Revised" License
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Move analysis functionality to brainglobe-utils
#76
adamltyson
closed
8 months ago
1
[Feature] run benchmarks on latest development branch of tools
#75
alessandrofelder
opened
8 months ago
3
Move heatmap functionality to brainglobe-utils
#74
adamltyson
closed
8 months ago
1
Move analysis functionality of brainmapper into brainglobe-utils
#73
adamltyson
closed
8 months ago
1
Add hard dependency on brainglobe-meta package
#72
willGraham01
closed
8 months ago
7
Deal with cells falling outside of the registered atlas boundary
#71
adamltyson
closed
8 months ago
1
Add more brainmapper tests
#70
adamltyson
opened
8 months ago
0
Simplify brainmapper export
#69
adamltyson
closed
8 months ago
1
Remove brainmapper export to abc4d?
#68
adamltyson
closed
8 months ago
0
Rename incorrect instances of cellfinder to brainmapper
#67
adamltyson
closed
8 months ago
3
Update cellfinder dependency
#66
adamltyson
closed
8 months ago
1
[Feature] Speed up the CI tests
#65
willGraham01
opened
9 months ago
8
Cellfinder config + path change
#64
sfmig
closed
8 months ago
1
Update log & metadata saving to use the brainmapper name rather than cellfinder
#63
adamltyson
closed
8 months ago
1
Workflow tests caching
#62
sfmig
closed
8 months ago
2
Teeeny typo
#61
adamltyson
closed
9 months ago
1
Rename cellfinder CLI
#60
adamltyson
closed
8 months ago
2
[Feature] Benchmark memory usage for cellfinding workflow (Python API)
#59
alessandrofelder
opened
9 months ago
0
Coexistance of cellfinder+brainreg CLI tool and cellfinder-core workflow
#58
sfmig
closed
9 months ago
6
Detect dependency breaks [Feature]
#57
sfmig
opened
9 months ago
1
Comparative benchmarks [Feature]
#56
sfmig
opened
9 months ago
0
Make benchmarks pip installable for devs [Feature]
#55
sfmig
closed
9 months ago
1
Prepare for `cellfinder` merge
#54
willGraham01
closed
9 months ago
2
Cellfinder config improvements
#36
sfmig
closed
8 months ago
0
Cellfinder workflow paths
#35
sfmig
closed
8 months ago
0
Cellfinder workflow tests further improvements + caching
#34
sfmig
closed
8 months ago
0
Clarify repo purposes
#33
alessandrofelder
closed
9 months ago
5
Refactor benchmarks' tests
#32
sfmig
closed
5 months ago
2
[BUG] Brainglobe-workflows not found?
#31
Eddymorphling
closed
10 months ago
17
Remove Docker build
#30
willGraham01
closed
10 months ago
1
Migrate `cellfinder` into this package
#29
willGraham01
closed
9 months ago
2
Avoid all-catch Exception
#40
alessandrofelder
opened
10 months ago
0
drop Python 3.8, support Python 3.11
#41
alessandrofelder
closed
3 months ago
2
Update asv.conf.json to point to main branch
#28
sfmig
closed
11 months ago
0
Refactor tests
#27
sfmig
closed
9 months ago
2
Refactor cellfinder workflow tests
#26
sfmig
closed
9 months ago
1
Move from `logging` to `fancylog`
#25
alessandrofelder
opened
11 months ago
1
Benchmark for cellfinder workflow with CLI arguments
#24
sfmig
closed
11 months ago
2
Cellfinder workflow CLI input argument with tests
#23
sfmig
closed
11 months ago
1
Use pydantic instead of dataclasses to define configs?
#22
sfmig
opened
12 months ago
0
Benchmarking functionalities that are not part of the main workflow
#21
sfmig
opened
12 months ago
1
Cellfinder workflow tests
#20
sfmig
closed
11 months ago
1
Agree on large data to be used for end-to-end tests
#19
alessandrofelder
opened
1 year ago
0
Asv benchmarks for cellfinder workflow
#18
sfmig
closed
5 months ago
2
Error 500 when we open a PR in the GIN Brainglobe/test-data repo
#17
sfmig
closed
8 months ago
5
add an example script for registration
#16
alessandrofelder
closed
2 months ago
3
Cellfinder workflow
#15
sfmig
closed
11 months ago
3
transfer back from `brainglobe-scripts`
#14
alessandrofelder
closed
1 year ago
1
Create example script for access atlas data
#13
alessandrofelder
opened
1 year ago
1
Create example script for transforming data from sample to atlas space
#12
alessandrofelder
opened
1 year ago
0
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