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brainglobe
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brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
BSD 3-Clause "New" or "Revised" License
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Replace `imio` with `brainglobe-utils`
#128
IgorTatarnikov
closed
1 week ago
1
Schedule tests to run weekly
#127
IgorTatarnikov
closed
1 week ago
1
[Feature] Create benchmarks for individual tools
#126
alessandrofelder
opened
1 month ago
0
[Feature] Run asv with `pip install -vvv` for extra debugging info
#125
alessandrofelder
opened
1 month ago
0
Avoid caching `pip` dependencies
#124
alessandrofelder
closed
1 month ago
1
Update dependencies
#123
adamltyson
closed
2 months ago
1
[BUG] Error when setting up a new brainglobe env
#122
Eddymorphling
closed
2 months ago
11
Standardise contact information in readme
#121
adamltyson
closed
2 months ago
1
Add brainglobe-atlasapi to `latest-github-requirements`
#120
sfmig
closed
3 months ago
1
Slim dependencies
#119
sfmig
closed
3 months ago
2
pin to pytorch-version of cellfinder
#118
alessandrofelder
closed
3 months ago
1
Update supported Python versions and remove cibuildwheel config
#117
adamltyson
closed
3 months ago
1
Update default batch size to 64
#116
adamltyson
closed
3 months ago
1
Adding simple benchmark
#115
sfmig
closed
2 months ago
2
Force cpu usage on macos-latest runners
#114
IgorTatarnikov
closed
4 months ago
3
Update brainmapper to match cellfinder release candidate
#113
IgorTatarnikov
closed
4 months ago
2
Remove calls to TensorFlow related cellfinder functions
#112
IgorTatarnikov
closed
4 months ago
1
Increase benchmarks timeout
#111
sfmig
closed
4 months ago
0
Define two asv configurations for pip and latest-github dependencies
#110
alessandrofelder
closed
4 months ago
1
Update caching
#109
adamltyson
closed
4 months ago
1
Update use of brainglobe-utils image IO
#108
adamltyson
closed
4 months ago
1
Update use of cellfinder.core download cli
#107
adamltyson
closed
4 months ago
1
Follow numpy structure and add asv-specific README
#104
sfmig
closed
4 months ago
1
Simplify workflows
#103
sfmig
closed
2 months ago
1
Cache for cellfinder workflow tests
#102
sfmig
closed
5 months ago
3
Cache atlases in CI for brainmapper tests
#101
sfmig
closed
5 months ago
1
naive attempt at fixing HDF5
#100
alessandrofelder
closed
5 months ago
1
[Feature] A benchmark for classification on a large dataset
#99
alessandrofelder
opened
5 months ago
1
[BUG] Output folder created before running benchmarks
#98
sfmig
opened
5 months ago
0
Cache cellfinder model in CI
#97
sfmig
closed
5 months ago
1
Check benchmarks on CI
#96
sfmig
closed
5 months ago
1
Rename `cellfinder_core` to `cellfinder`
#95
sfmig
closed
5 months ago
1
Run cellfinder benchmarks on small data
#94
sfmig
closed
5 months ago
1
Remove entry point for cellfinder workflow
#93
sfmig
closed
5 months ago
3
Update gitignore
#92
sfmig
closed
5 months ago
1
Add codecov token
#91
K-Meech
closed
5 months ago
2
[BUG] `brainmapper` update needed in light of CLI fails in `cellfinder`
#90
willGraham01
closed
5 months ago
4
Replace source_custom_config_cellfinder with newer function
#89
matham
closed
5 months ago
0
Support single z-stack tif file for input
#88
matham
closed
4 months ago
3
update to new cellfinder function names
#87
alessandrofelder
closed
5 months ago
1
update atlas api import with new name
#86
alessandrofelder
closed
6 months ago
2
[BUG] brainmapper didn't receive the brainglobe-atlasapi update
#85
K-Meech
closed
6 months ago
0
[BUG] bg_space -> brainglobe_space
#84
alessandrofelder
closed
7 months ago
1
[BUG] Cellfinder csv output does not include all cells detected
#83
Eddymorphling
closed
7 months ago
24
brainglobe_space name change
#82
sfmig
closed
7 months ago
3
Update test_and_deploy.yml
#81
alessandrofelder
closed
7 months ago
0
Check asv benchmarks in CI
#80
sfmig
closed
5 months ago
2
Remove unused code and refactor
#79
adamltyson
closed
8 months ago
1
[BUG] Brainmapper does not perform classication
#78
Eddymorphling
closed
8 months ago
9
Update GH actions badge
#77
adamltyson
closed
8 months ago
1
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