broadinstitute firecloud_developer_toolkit issues

broadinstitute / firecloud_developer_toolkit

Utilities to help algorithm developers dockerize new tasks, debug them, and put them into Firecloud.

BSD 3-Clause "New" or "Revised" License

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issues

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crom - template should tar whole output directory upon failure

#47 gsaksena opened 7 years ago
0
crom - add repo-level config file

#46 gsaksena opened 7 years ago
0
crom - add mode to use GDAC file naming conventions

#45 gsaksena opened 7 years ago
0
crom - Mac/OSX support

#44 gsaksena closed 7 years ago
1
crom - Mac/OSX support

#43 gsaksena opened 7 years ago
0
crom - cromwell console output should be filtered

#42 gsaksena opened 7 years ago
0
install - open ssh server

#41 gsaksena opened 7 years ago
0
crom - localize_inputs.py crashes on float args.

#40 gsaksena opened 7 years ago
0
crom - runcromwell should abort if invalid wdl

#39 gsaksena opened 7 years ago
0
crom - wdl should be more tightly bound to container and git version

#38 gsaksena opened 7 years ago
1
pipette - doc how to restart with job avoidance for debug

#37 gsaksena opened 7 years ago
0
crom - pushimage - document that docker repo must first be created externally

#36 gsaksena opened 7 years ago
0
pipette - add timestamp to stdout log

#35 gsaksena opened 7 years ago
0
crom - fix disk type string in monitor_start.log

#34 gsaksena closed 7 years ago
1
crom - support for multiple wdl's

#33 gsaksena opened 7 years ago
1
crom - add dstat and monitor log files as outputs in template

#32 gsaksena opened 7 years ago
0
fdtsetroot broken on Win10 ubuntu

#31 gsaksena opened 7 years ago
0
display current project when running gce commands

#30 gsaksena opened 7 years ago
0
crom - /opt/execution, /opt/inputs may be symlinked to old run

#29 gsaksena opened 7 years ago
0
crom - runbash should drop symlinks to /opt/inputs, /opt/execution automatically based on script

#28 gsaksena opened 7 years ago
0
crom - sourcefiles.method.list needs tabs - should be more tolerant

#27 gsaksena opened 7 years ago
0
crom - enable Cromwell job avoidance as an option

#26 gsaksena opened 7 years ago
0
gce - should it be easier to modify the base image name of a new vm?

#25 gsaksena opened 7 years ago
0
install - vi

#24 gsaksena opened 7 years ago
0
crom - add tar-everything to the script

#23 gsaksena opened 7 years ago
0
crom - template should use int rather than string parameter

#22 gsaksena opened 7 years ago
0
gce - script for emergency cost containment

#21 gsaksena opened 7 years ago
0
install - add compiled crcmod to python

#20 gsaksena closed 7 years ago
1
crom - should warn of mismatch between local VM specs and those requested in the WDL

#19 gsaksena opened 7 years ago
0
crom - command to clear only the old outputs

#18 gsaksena opened 7 years ago
0
crom - multi-task workflow support

#17 gsaksena opened 7 years ago
0
install - rsub (opens file in local editor via command on remote vm)

#16 gsaksena closed 7 years ago
1
install - openssl

#15 gsaksena opened 7 years ago
0
install - gcs-fuse

#14 gsaksena opened 7 years ago
0
install - Matlab (interactive)

#13 gsaksena opened 7 years ago
0
install - cisco anyconnect vpn

#12 gsaksena opened 7 years ago
1
install - x11, vnc server

#11 gsaksena opened 7 years ago
1
gce - enable individual to set dollar notification thresholds on their project

#10 gsaksena opened 7 years ago
0
gce - make it easy to migrate to different sized vm

#9 gsaksena opened 7 years ago
0
gce - idl vm detection/notification

#8 gsaksena opened 7 years ago
0
gce - add suspend_vm feature

#7 gsaksena opened 7 years ago
0
crom - things break when relative path used for setrepodir

#6 gsaksena opened 7 years ago
0
docs - wdl command - bash vs python

#5 gsaksena opened 7 years ago
0
gce - need support for imaging a vm

#4 gsaksena opened 7 years ago
0
gce - wrap utilities to export files from vm

#3 gsaksena opened 7 years ago
0
algutil - process monitor testing

#2 gsaksena opened 7 years ago
0
docs - add basic info about managing and testing wdl in Firecloud

#1 gsaksena opened 7 years ago
2