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broadinstitute
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genetic-prevalence-estimator
https://genie.broadinstitute.org/
BSD 3-Clause "New" or "Revised" License
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Adding star status to ClinVar classification
#86
sambaxter
closed
2 years ago
0
"Included from" column blank
#85
sambaxter
closed
2 years ago
1
Conflicting levels of pathogenicity pulling more than it should
#84
sambaxter
closed
2 years ago
1
Add Allele frequency to download
#83
sambaxter
closed
2 years ago
0
Being able to change/save variant lists after creation
#82
sambaxter
closed
1 year ago
1
Including subcontinental ancestries
#81
sambaxter
closed
2 years ago
1
Changing label for “scientific”
#80
sambaxter
closed
2 years ago
0
Add filtering of columns for variant table
#79
sambaxter
closed
1 year ago
4
Version defaulting
#78
sambaxter
closed
2 years ago
0
Add sorting functionality to variant list
#77
sambaxter
closed
2 years ago
0
Change "username" to "email"
#76
sambaxter
closed
2 years ago
0
Activation of user when added to list
#75
sambaxter
closed
1 year ago
1
Allow specifying a transcript for custom variant lists
#74
sambaxter
closed
2 years ago
5
Error when renaming variant list
#73
sambaxter
closed
2 years ago
0
Architecture diagram
#72
nawatts
opened
2 years ago
0
Run tests before deploying
#71
nawatts
opened
2 years ago
0
Use hailctl to start Dataproc clusters
#70
nawatts
opened
2 years ago
0
Document running data pipelines
#69
nawatts
closed
1 year ago
0
Document running database migrations
#68
nawatts
closed
1 year ago
0
Run ClinVar import on a schedule
#67
nawatts
opened
2 years ago
0
Handle worker requests that repeatedly fail / time out
#66
nawatts
opened
2 years ago
0
Configure structured logging
#65
nawatts
closed
1 year ago
3
Add report view
#64
nawatts
closed
1 year ago
2
Allow including variants based on condition in ClinVar
#63
nawatts
opened
2 years ago
2
Sort variants table by allele frequency
#62
nawatts
closed
2 years ago
4
Split up carrier frequency and prevalence sections
#61
nawatts
closed
2 years ago
0
Change carrier frequency by source graph to stacked bars
#60
nawatts
closed
2 years ago
0
Do not break down prevalence by source
#59
nawatts
closed
2 years ago
0
Fix math for prevalence
#58
nawatts
closed
2 years ago
0
Document preparing data for development
#57
nawatts
closed
2 years ago
0
Size graphs to fit available width
#56
nawatts
closed
2 years ago
0
Add legend for graphs
#55
nawatts
closed
2 years ago
0
Add tooltips to graphs
#54
nawatts
closed
2 years ago
0
Create a variant list by selecting variants from gnomAD
#53
nawatts
opened
3 years ago
1
Compare contributions of variants from each source to overall carrier frequency / prevalence
#52
nawatts
closed
2 years ago
0
Add bar graphs showing carrier frequency / prevalence for each population
#51
nawatts
closed
2 years ago
0
Allow excluding individual variants from calculations
#50
nawatts
closed
2 years ago
0
Show the reason why each variant was included in a recommended variant list
#49
nawatts
closed
2 years ago
0
Only include populations with at least 1,000 samples for calculations
#48
nawatts
closed
2 years ago
0
Clarify which variants will be included in recommended variant lists
#47
nawatts
closed
2 years ago
0
Display carrier frequency and prevalence in multiple formats
#46
nawatts
closed
2 years ago
0
Calculate carrier frequency using both simplified and full model
#45
nawatts
closed
2 years ago
0
Show population specific allele frequencies on variant list page
#44
nawatts
closed
2 years ago
0
Store ClinVar clinical significance for variants
#43
nawatts
closed
3 years ago
0
Require that all variants in a custom variant list are unique
#42
nawatts
closed
3 years ago
0
Configure paths to ClinVar and gnomAD data separately
#41
nawatts
closed
3 years ago
0
Store version of ClinVar used to generate gnomAD variant list
#40
nawatts
closed
3 years ago
0
Update link styles
#39
nawatts
closed
3 years ago
0
Display consequence information for variants in variant list
#38
nawatts
closed
3 years ago
0
Store gnomAD version used to calculate prevalence for custom variant lists
#37
nawatts
closed
3 years ago
0
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