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cgat-developers
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cgat-flow
cgat-flow repository
MIT License
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GSEA fixes
#111
jscaber
closed
4 years ago
1
rpy2 library migration fix
#110
jscaber
closed
4 years ago
0
rpy2 exception rnaseqqc
#109
jscaber
closed
4 years ago
4
Update documentation of pipeline_readqc.py
#108
kevinrue
closed
4 years ago
6
Small bug fix in summarizeFastQC within pipeline_readqc
#107
microbialman
closed
4 years ago
6
modified salmon index to remove duplicated kmer option
#106
Acribbs
closed
4 years ago
0
Update .travis.yml for xvfb and re-order conda channels
#105
sebastian-luna-valero
closed
4 years ago
1
Ac peakcalling picard
#104
Acribbs
closed
4 years ago
0
GREAT regions
#103
IanSudbery
closed
4 years ago
4
Filter HOT regions
#102
Acribbs
opened
5 years ago
0
Ac remove report
#101
Acribbs
closed
5 years ago
0
Ac bowtie2
#100
Acribbs
closed
5 years ago
0
Ac new env
#99
Acribbs
closed
5 years ago
0
Mapping pipeline does not work with latest version of Bowtie2
#98
stewalsh04
closed
5 years ago
5
Ac export
#97
Acribbs
closed
5 years ago
0
updated Rmarkdown report so tests pass and it runs to completion with…
#96
Acribbs
closed
5 years ago
5
removed hard coded params from pipeline_exome
#95
Acribbs
closed
5 years ago
0
Ac fix r report
#94
Acribbs
closed
5 years ago
1
Ac removegsea
#93
Acribbs
closed
5 years ago
1
python-drmaa is no longer available as a conda package
#92
sebastian-luna-valero
closed
5 years ago
0
testing: TypeError: zip argument #1 must support iteration
#91
Acribbs
closed
5 years ago
5
multiple P.run() in one function failing
#90
Acribbs
closed
5 years ago
2
[WIP] Review conda install
#89
sebastian-luna-valero
closed
5 years ago
4
Travis tests failing
#88
Acribbs
closed
5 years ago
13
pipeline_readqc error in pandas concat
#87
nickilott
closed
5 years ago
11
error message during installation of CGAT-core
#86
amayer21
closed
5 years ago
5
Mapping rate no longer reported by any pipeline
#85
IanSudbery
opened
5 years ago
6
Ac remove semi
#84
Acribbs
closed
5 years ago
0
Ac insert size
#83
Acribbs
closed
5 years ago
0
redirected error to file for bam2bam
#82
Acribbs
closed
5 years ago
3
Problem with installation enviroment and importing BamTools module - missing compiler?
#81
stewalsh04
closed
5 years ago
3
STAR cannot using a named pipe when doing 2pass mapping as it require…
#80
IanSudbery
closed
5 years ago
16
STAR read from named pipe
#79
IanSudbery
closed
5 years ago
0
Memory in peakcalling checkBams
#78
IanSudbery
opened
5 years ago
8
Fix for #70 #68
#77
jscaber
closed
5 years ago
2
`bam2bam` usage in pipeline_bamstats
#76
IanSudbery
closed
5 years ago
1
Regex for paired sequencing in pipeline_readqc
#75
IanSudbery
opened
5 years ago
0
Pipelines not detecting termination of jobs
#74
IanSudbery
closed
5 years ago
7
IX Indexer is Deprecated (pandas)
#73
kevinrue
closed
5 years ago
5
Add peakcalling memory options to pipeline.yml
#72
kevinrue
closed
5 years ago
13
Wrong test for switch (?)
#71
kevinrue
closed
5 years ago
4
Ac fix table load
#70
Acribbs
closed
5 years ago
0
{KR} use the predict R script before deleting it
#69
kevinrue
closed
5 years ago
0
pipeline_readqc.py fails for `ValueError: table is empty` with FastQC tables
#68
kevinrue
closed
5 years ago
10
Fixes for Pipeline Splicing; STAR 2-pass Mapping
#67
jscaber
closed
5 years ago
5
have fixed various bug fixes that prevented auto-remove function from…
#66
Acribbs
closed
5 years ago
0
KRA: peakcalling yaml
#65
kevinrue
closed
5 years ago
3
Create Conda Environment for Pipeline Splicing
#64
jscaber
closed
5 years ago
0
RNASeqDiffExpression fixes
#63
jscaber
closed
5 years ago
1
Quasimapper Merging Bug - ATTENTION
#62
jscaber
closed
5 years ago
7
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