issues
search
cgat-developers
/
cgat-flow
cgat-flow repository
MIT License
13
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Ah integrate cgat apps r deps
#61
AndreasHeger
closed
5 years ago
0
Duplication of code between bamstats.py and mappingqc.py
#60
jscaber
opened
5 years ago
2
Various Fixes #53 #56 #58
#59
jscaber
closed
5 years ago
0
Strandedness is the wrong way around in bamstats
#58
jscaber
closed
5 years ago
5
Command sent to cluster only partially executed [rnaseqqc]
#57
jscaber
closed
5 years ago
10
single cell qc
#56
Acribbs
closed
5 years ago
6
{AH} rename lower case imports
#55
AndreasHeger
closed
5 years ago
0
Ah remove pipelines from module
#54
AndreasHeger
closed
5 years ago
0
Picard Memory
#53
jscaber
closed
5 years ago
2
Remove instances where ';' is used to join statements
#52
AndreasHeger
closed
5 years ago
1
separate pipelines from tasks
#51
AndreasHeger
closed
5 years ago
1
No transcript_info table with pipeline_genesets
#50
TomSmithCGAT
closed
5 years ago
4
Updated PipelineMapping.py for Sratoolkit
#49
CristinaAlexandru
closed
5 years ago
2
updated mapping to make tophat run
#48
Acribbs
closed
5 years ago
2
Segmentation fault error with cluster
#47
Charlie-George
closed
5 years ago
12
documentation does not refer to use of yml files
#46
Charlie-George
closed
5 years ago
4
have updated regex of ruffus command for mergeReadCounts because it w…
#45
Acribbs
closed
5 years ago
7
display of options doesn't work if correct bamfiles are not present
#44
Charlie-George
closed
5 years ago
4
Fixes for
#43
jscaber
closed
5 years ago
7
CGATReport parameterization for cgat-flow pipelines
#42
IanSudbery
closed
5 years ago
7
Ac docu
#41
Acribbs
closed
5 years ago
3
Missing graphviz dependency
#40
IanSudbery
closed
5 years ago
2
Implement an option to restart jobs terminated by SIGUSR2
#39
logust79
closed
5 years ago
2
Do not purge user modules during installation and fix #36
#38
sebastian-luna-valero
closed
5 years ago
0
csvdb in pipeline.yml
#37
sebastian-luna-valero
closed
5 years ago
0
Install error
#36
annajbott
closed
5 years ago
4
Fixes #33
#35
sebastian-luna-valero
closed
5 years ago
0
Database name
#34
IanSudbery
closed
5 years ago
6
PipelinePreprocess MasterProcessor adds extra ';' to bash script
#33
logust79
closed
5 years ago
1
Update installation
#32
sebastian-luna-valero
closed
6 years ago
0
fixes for pipeline_readqc
#31
snsansom
closed
6 years ago
1
bugfix runFeatureCounts in PipelineRnaseq.py
#30
sebastian-luna-valero
closed
6 years ago
5
Have changed the way temp files are used in featurecounts and it was …
#29
Acribbs
closed
6 years ago
2
Ac fastq screen
#28
Acribbs
closed
6 years ago
1
readqc pipeline broken
#27
Acribbs
closed
6 years ago
2
Running mapping
#26
Acribbs
closed
6 years ago
3
CondaValueError: invalid package specification: 404: Not Found
#25
logust79
closed
6 years ago
5
Update memory requirements in pipeline_genesets
#24
sebastian-luna-valero
closed
6 years ago
0
Disable fastq_screen in pipeline_readqc by default
#23
sebastian-luna-valero
closed
6 years ago
0
fix cutadapt paired untrimmed command
#22
sebastian-luna-valero
closed
6 years ago
0
Update loadReadCounts in pipeline_mapping to avoid duplicating entries
#21
sebastian-luna-valero
closed
6 years ago
0
Update runFeatureCounts in PipelineRnaseq.py
#20
sebastian-luna-valero
closed
6 years ago
23
Update annotateVariantsSNPeff in pipeline_exome
#19
sebastian-luna-valero
closed
6 years ago
0
migrating https://github.com/CGATOxford/CGATPipelines/pull/404
#18
sebastian-luna-valero
closed
6 years ago
5
Update pipeline template
#17
sebastian-luna-valero
closed
6 years ago
1
Clarify expected fastq name for input files
#16
sebastian-luna-valero
closed
6 years ago
0
New way of activating conda environments
#15
sebastian-luna-valero
closed
6 years ago
1
Add exportdir when missing in pipeline.yml
#14
sebastian-luna-valero
closed
6 years ago
0
bamstats studio report
#13
Acribbs
closed
5 years ago
2
pipeline testing
#12
Acribbs
closed
6 years ago
1
Previous
Next