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chanzuckerberg
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cryoet-data-portal-backend
CryoET Data Portal API server & ingestion scripts
MIT License
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Update gjensen dataset configs with latest fixes
#177
daniel-ji
opened
9 hours ago
0
Decouple schema python scripts from ingestion_tools dependencies
#176
daniel-ji
opened
22 hours ago
0
Chores: Deposition 10307
#175
uermel
opened
23 hours ago
0
Full config files for deposition 10307 (Datasets 10436, 10437, 10438)
#174
uermel
opened
23 hours ago
0
Dataset config validation: make ontology object & exclusion list checking case sensitive
#173
daniel-ji
closed
4 hours ago
0
Refactor dataset config validation to support wormbase strains
#172
daniel-ji
opened
1 day ago
0
Fetch logs of enqueue_runs.py script
#171
daniel-ji
opened
1 day ago
0
fix: Segmentation mask output datatype to int
#170
manasaV3
opened
1 day ago
3
Fix setting extended header when importing MRC
#169
uermel
closed
23 hours ago
0
update dataset config validation docs with poetry install requirements
#168
daniel-ji
closed
1 day ago
1
Fix ingestion / importer annotation version bug
#167
daniel-ji
closed
1 day ago
0
TomoConverter `update_headers` function throwing ValueError
#166
daniel-ji
closed
23 hours ago
1
Dataset config: source placeholders, cell strain format fix, ground_truth_status / method_type fix; schema improvements
#165
daniel-ji
closed
2 days ago
0
Create validation exclusions for dataset config extended validation
#164
daniel-ji
closed
1 day ago
0
Create excludelist for dataset config extended validation
#163
daniel-ji
closed
3 days ago
0
gjensen_config.py: remove whitespace from dataset_title and dataset_description and remove null objects
#162
daniel-ji
closed
3 days ago
0
Dataset config extended validation excludelist
#161
daniel-ji
closed
3 days ago
0
DRAFT: proposed changes for v2 schema
#160
jgadling
opened
3 days ago
0
Update template.yaml and dataset config schema, supporting optional metadata
#159
daniel-ji
closed
2 days ago
0
Dataset config whitelist
#158
daniel-ji
closed
3 days ago
0
Schema refactor: ExperimentalMetadata -> ExperimentMetadata and move CrossReferences to metadata.yaml
#157
daniel-ji
closed
2 days ago
0
Represent current API/DB schema as a linkml document
#156
jgadling
opened
4 days ago
0
869 pydantic validation: setup, annotations, datasets, depositions, tiltseries, tomograms, and sources
#155
daniel-ji
closed
3 days ago
0
create script to check for invalid configs / missed aws config files
#154
daniel-ji
opened
1 week ago
0
Updating deposition ingestion
#153
manasaV3
opened
1 week ago
0
add deposition_keyphotos to schema / metadata
#152
daniel-ji
closed
1 week ago
1
fix template.yaml annotation sources
#151
daniel-ji
closed
1 week ago
0
Rename cell type, other dataset config files fixes
#150
daniel-ji
closed
1 week ago
0
pydantic validation: `pydantic__no_name_validation` flag
#149
daniel-ji
closed
4 days ago
1
Create script to fetch `enqueue_runs.py` logs from AWS
#148
daniel-ji
closed
1 day ago
0
Change cell_strain and cell_type of 10426-10435 to conform to new validation rules
#147
uermel
closed
1 week ago
0
Add ability to store all unique values when using dataset_config_merge.py
#146
daniel-ji
closed
1 week ago
0
Refactor Weighted back projection -> WBP, remove "None" instances
#145
daniel-ji
closed
1 week ago
0
Schema changes: Refactor cross_references.dataset_publications -> cross_references.publications, add PDB as database entry
#144
daniel-ji
closed
1 week ago
0
Add deposition to metadata
#143
daniel-ji
closed
1 week ago
0
fix deposition_10303.yaml spacing
#142
daniel-ji
closed
1 week ago
0
Dataset config validation improvements & intellisense & workflow changes
#141
daniel-ji
closed
1 week ago
0
dataset config files pydantic validation for datasets and depositions
#140
daniel-ji
closed
4 days ago
0
Support multiple glob sources for annotations
#139
daniel-ji
closed
1 week ago
0
Replace string-typed 'None' values in dataset configs and gjensen_config.py
#138
daniel-ji
closed
1 week ago
0
dataset config files pydantic validation setup and annotations
#137
daniel-ji
closed
4 days ago
0
878 validation move and fixes
#136
daniel-ji
closed
1 week ago
0
Adds deposition entity to configs
#135
manasaV3
closed
1 week ago
1
Update schema to create files that don't cause conflict in names
#134
manasaV3
closed
2 weeks ago
0
Add validation script docs
#133
daniel-ji
closed
2 weeks ago
0
Template, schema, and config updates
#132
daniel-ji
closed
2 weeks ago
0
Reserve IDs for deposition 10307, datasets 10436, 10437, 10438
#131
uermel
closed
2 weeks ago
0
Add validation Github workflow
#130
daniel-ji
closed
2 weeks ago
5
Add validation scripts for dataset config files
#129
daniel-ji
closed
2 weeks ago
0
Update schema in preparation for dataset config validation
#128
daniel-ji
closed
2 weeks ago
0
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