commfish seak_sablefish issues

commfish / seak_sablefish

NSEI sablefish stock assessment

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adopting Phil's 2022 changes into master

#57 PhilJoy closed 1 year ago
0
2021 stock assessment

#56 JaneSullivan-NOAA closed 3 years ago
1
Changes in macroscopic maturity assignments

#55 rhea-adfg opened 3 years ago
0
indexing on ypr

#54 JaneSullivan-NOAA closed 3 years ago
0
check array indexing

#53 JaneSullivan-NOAA opened 3 years ago
0
Update scaa_datprep.R

#52 JaneSullivan-NOAA opened 3 years ago
0
Fitting model with TMBhelper::fit_mod() and with random effects not working

#51 jysullivan opened 4 years ago
0
Ex-vessel value

#50 jysullivan opened 4 years ago
0
Alternative ways of modeling selectivity / retention probability / discard mortality

#49 jysullivan opened 4 years ago
0
Epsilon bias correction in sdreport()

#48 jysullivan opened 4 years ago
0
mean cpue

#47 ben-williams opened 4 years ago
1
replace_na

#46 ben-williams closed 4 years ago
0
Tides longline survey cpue

#45 jysullivan opened 4 years ago
0
Differences between the state and federal models

#44 jysullivan opened 4 years ago
0
2020 stock assessment developments

#43 jysullivan opened 4 years ago
0
Impact of assuming mean recruitment for BRPs

#42 jysullivan opened 4 years ago
0
Data discrepancies in tag recoveries in the fishery

#41 jysullivan opened 4 years ago
1
odd trip_no in 2019 data

#40 jysullivan closed 4 years ago
8
Countbacks of marked vs unmarked fish on the longline survey

#39 jysullivan closed 4 years ago
5
Review of TMB assessment

#38 jysullivan closed 4 years ago
2
Chatham age-length keys

#37 jysullivan opened 5 years ago
1
Changes to sampling protocol on the NSEI longline survey

#36 jysullivan opened 5 years ago
0
Debug tmb

#35 jysullivan closed 5 years ago
0
Update debugging branch

#34 jysullivan closed 5 years ago
0
Readability code with age comps

#33 jysullivan opened 5 years ago
7
Convert estimated parameters to log-space

#32 jysullivan closed 5 years ago
1
Ageing issue with the 2013/2014 year classes

#31 jysullivan opened 5 years ago
3
Sensitivity analysis on mark-recapture estimates in ASA

#30 jysullivan closed 4 years ago
0
NOAA just sent in tags

#29 jysullivan closed 5 years ago
1
Compute Chapman estimate in Bayesian framework

#28 jysullivan opened 5 years ago
4
Estimating CPUE in the mark-recapture model

#27 jysullivan closed 5 years ago
0
Improve readability of faceted graphs

#26 jysullivan closed 5 years ago
0
Plot age comps differently

#25 jysullivan closed 5 years ago
0
Oddity in proportion mature

#24 jysullivan closed 5 years ago
2
Bootstrap confidence intervals for CPUE

#23 jysullivan closed 4 years ago
2
Retrospective plot

#22 jysullivan closed 5 years ago
3
Ecosystem discussion in the assessment report

#21 jysullivan closed 5 years ago
1
Effect of discard mortality on ABC and adjusting the abundance estimate

#20 jysullivan opened 5 years ago
6
2019 stock assessment developments

#19 jysullivan opened 5 years ago
6
Weight-at-age

#18 jysullivan closed 5 years ago
2
plus group

#17 jysullivan closed 5 years ago
0
1-hr soak time

#16 jysullivan closed 5 years ago
2
chapman m-r variance

#15 ben-williams closed 5 years ago
2
Random effects for recruitment!

#14 jysullivan closed 5 years ago
0
biological reference points

#13 jysullivan closed 5 years ago
0
time-varying selectivity

#12 jysullivan closed 5 years ago
0
allometric relationship

#11 ben-williams closed 5 years ago
0
Allometry

#10 ben-williams opened 6 years ago
4
Prior on immigration parameter

#9 jysullivan closed 5 years ago
0
Defining temporal strata

#8 jysullivan closed 5 years ago
0