czbiohub-sf tabula-muris-senis issues

czbiohub-sf / tabula-muris-senis

Tabula Muris Senis

http://tabula-muris-senis.ds.czbiohub.org

BSD 3-Clause "New" or "Revised" License

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Do I need to log-transform the Tabula Muris Senis Processed files (to use with scanpy) download from Figshare?

#54 saramorsy77 closed 1 week ago
1
Does there batch effect between the data in Tabula muris (2018 paper) and Tabula muris Senis (2020 paper)?

#53 xuxiaohan opened 3 months ago
0
h5ad to BAM matching

#52 davek44 opened 9 months ago
0
Forbidden BAMs

#51 davek44 opened 10 months ago
0
Request for Data Link for Figures 1 and 3 in the article "A single-cell transcriptomic atlas characterizes ageing tissues in the mouse"

#50 dnj000701 opened 11 months ago
0
Information about liver dataset

#49 babyviper opened 1 year ago
0
Tabula Muris vs Tabula Muris Senis

#48 davek44 closed 10 months ago
1
Mitochondrial genes and ERCC genes

#47 cutleraging opened 1 year ago
0
Where can I find the fastq files for adata_with_ercc_genecode_counts_for_gatk_with_metadata.h5ad?

#46 TdzBAS opened 1 year ago
1
Are the bam files missing for some cells of the FACS data? What are the 'TK' parameters?

#45 GexinLiu closed 1 year ago
2
Update LICENSE

#44 AhmetCanSolak closed 1 year ago
0
Raw data sample information

#43 zhuzna closed 1 year ago
1
Request for the marker gene

#42 doou0 opened 1 year ago
2
How can I find the marker genes used to annotate each cell type?

#41 amsegura closed 1 year ago
4
question about age coefficient (coef (age.logFC))

#40 PolinaShichkova closed 1 year ago
3
How do I extract the list of genes names in each tissue?

#39 orrl16 opened 1 year ago
8
Is 'import util' an author-defined function?

#38 Famingzhao closed 2 years ago
0
Raw fastq is unprocessed or re-extract from BAM?

#37 zyh4482 opened 2 years ago
0
Fastq annotations for Plate_seq fastq files

#36 seunghooh5 opened 2 years ago
0
loss some cells after import ? and how are cell markers defined ?

#35 Nidane opened 2 years ago
0
How are the 10X files named in AWS?

#34 XuZhang0 opened 3 years ago
2
Having trouble locating SC and bulk RNA-seq data (FASTQ files) for BM, liver, and tongue

#33 wjk243 opened 3 years ago
0
Accessed raw data consists of floating-point numbers

#32 flugende opened 3 years ago
0
Options for UMAP generation

#31 sophie-harrington opened 3 years ago
0
mm10plus

#30 hanhyebin opened 3 years ago
3
Brain Non-myeloid data analysis questions

#29 Gabi86 opened 3 years ago
1
Update README.md

#28 aopisco closed 3 years ago
0
bbknn metadata file

#27 donshiva88 closed 3 years ago
4
WBC

#26 anahSG closed 3 years ago
1
Question about data downloading

#25 vikki0816 closed 3 years ago
1
Documentation link on AWS Registry of Open Data is broken

#24 jennomics closed 3 years ago
1
Missing genes in raw data

#23 DennisPost10 closed 3 years ago
1
About data interpretation

#22 VP0521 closed 3 years ago
5
How to find the raw data of cardiomyocytes and heart？（IN AWS）

#21 TrumanZYX closed 3 years ago
1
FACS Brain Non-Myeloid 3-month data are NaN and 18, 24 data are Neuronal

#20 ghost closed 3 years ago
1
How was the droplet (and facs) data processed/normalized

#19 machlabd closed 4 years ago
6
Do I need to normalize the Processed files (to use with scanpy) download from Figshare?

#18 genecell closed 3 years ago
4
An expression matrix for the SCAT tissue is required

#17 Laura-1997 closed 4 years ago
4
Help downloading data in other ways

#16 ShuilinLiao closed 3 years ago
4
How to access the cell type annotation

#15 onebeingmay closed 4 years ago
12
Some FASTQ files on AWS missing reads?

#14 tdurham86 closed 3 years ago
4
No counts in AWS h5ad object

#13 gokceneraslan closed 4 years ago
1
Mapping from cell ontology class number to labels?

#12 joycekang closed 4 years ago
3
Mismatch between raw and processed data

#11 almog5690 closed 3 years ago
2
Cannot load Brain_Non-Myeloid_facs.h5ad

#10 giovp closed 3 years ago
9
Help downloading data from AWS

#9 sevans625 closed 3 years ago
4
Cluster labels for droplet data

#8 jw156605 closed 4 years ago
1
Raw data and processed data not matching?

#7 huiwenzh closed 4 years ago
8
Metadata labels

#6 sbrn3 closed 4 years ago
4
Diversity_score_martin

#5 martinjzhang closed 5 years ago
0