dviraran SingleR issues

dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

GNU General Public License v3.0

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issues

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Use tags or releases for package versions

#64 PertuyF opened 5 years ago
2
SingleR fails with Seurat 3.0.0 installed: no slot of name "data" for this object of class "Seurat"

#63 plijnzaad opened 5 years ago
3
CreateSinglerObject Error

#62 Kailewang opened 5 years ago
6
Perform DE analysis on singleR Browser website

#61 ChaDuss opened 5 years ago
2
CreateSinglerObject with custom ref.list

#60 GHAStVHenry closed 5 years ago
4
Problem when try to use custom geneset reference

#59 ChaDuss opened 5 years ago
2
The missing data in the" \manuscript_figures\FiguresData"

#58 liuxch5 opened 5 years ago
1
SingleR.PlotTsne

#57 mnovalri opened 5 years ago
2
Cannot find CreateBigSingleRObject function

#56 tkapello opened 5 years ago
3
Error in get("mcinteractive", pkg)

#55 hfberg closed 5 years ago
3
invalid 'row.names' length when use convertSingleR2Browser

#54 panxiaoguang opened 5 years ago
7
CreateSinglerObject in Window

#53 whdmstjr0702 opened 5 years ago
4
Error in FUN(X[[i]], ...) : object 'x' not found

#52 NTNguyen13 closed 5 years ago
2
quantile.use argument

#51 roosheelpatel closed 3 years ago
1
Error with SingleR.DrawHeatmap

#50 mengchengyao opened 5 years ago
3
Regress out covariates

#49 ishanparanjpe opened 5 years ago
6
dimnames error in CreateSinglerSeuratObject

#48 ysbioinfo opened 5 years ago
6
eror when creating custom reference

#47 danshu opened 5 years ago
5
Download cluster CSV

#46 hfberg opened 5 years ago
4
ref list is not pass into the CreateBigSingleRObject function

#45 qianhuiSenn closed 5 years ago
2
Error in calculateSingScores

#44 chenv3 closed 5 years ago
2
fine.tune with new reference

#43 drtrix90 opened 5 years ago
3
dimnames error in CreateSinglerObject

#42 z5ouyang opened 5 years ago
2
CreateSinglerSeuratObject error

#41 drtrix90 opened 5 years ago
14
Remove certain celltype from reference data

#40 ysbioinfo opened 5 years ago
2
Empty slot other for singler from SingleR.Combine()

#39 danshu closed 5 years ago
2
Error when running SingleR.combine

#38 mbassalbioinformatics closed 5 years ago
4
installation error around hdf5r

#37 trptyrphe11 opened 5 years ago
7
SingleR.Subset returns error

#36 RyanSchubert closed 5 years ago
11
Error in calculateSignatures

#35 chenv3 closed 5 years ago
4
Still a rownames issue in convertSingleR2Browser

#34 hfberg opened 5 years ago
6
CreateBigSingleRObject error

#33 danshu closed 5 years ago
6
combine different datasets with SingleR.Combine?

#32 hfberg closed 5 years ago
6
Retrieve reference genome and return no match

#31 biansr opened 5 years ago
1
Error in CreateSinglerSeuratObject

#30 mengchengyao opened 5 years ago
4
How are top.n cell types selected in SingleR.DrawHeatmap

#29 danshu closed 5 years ago
2
dimention reduction using other method such as UMAP

#28 danshu closed 5 years ago
2
convertSingleR2Browser error

#27 danshu closed 5 years ago
6
install error

#26 slg0904 opened 5 years ago
11
CreateSinglerObject on hpc (caught segfault)

#25 hjc0818 opened 5 years ago
2
calculation of non default number of pcs

#24 zhihua-chen closed 5 years ago
1
CreateBigSingleRObject() error

#23 alexandruioanvoda opened 5 years ago
1
Disconnected from server

#22 hfberg closed 5 years ago
4
Pass numCores to calculateSignatures

#21 alexandruioanvoda closed 5 years ago
0
Possibility of using a single cell expression matrix as reference?

#20 qianhuiSenn closed 5 years ago
11
ConvertSingleR2Browser

#19 hfberg closed 5 years ago
9
Error in utils:download.file when installing SingleR

#18 hfberg opened 5 years ago
3
Fix bug of combining cor matrix (data.table 1.20.0)

#17 shenyang1981 closed 5 years ago
0
Error with 'replacement has 1378 rows, data has 1345'

#16 biansr opened 5 years ago
6
MCA-dataset tutorial error

#15 alexandruioanvoda closed 5 years ago
7

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