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etal
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cnvkit
Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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build(deps): bump reportlab from 3.6.8 to 3.6.13 in /requirements
#842
dependabot[bot]
closed
9 months ago
0
Docker image of cnvkit does not contain additional scripts
#841
MatteoSchiavinato
closed
2 months ago
3
A question about purity assumption in the Docs
#840
RysBen
opened
10 months ago
0
Calculating non-integer copy number variations
#839
Dingersrun
opened
10 months ago
0
"Genemetrics" combination algorithm seems to include an additional antitarget bin
#838
Liyang-Zhang
opened
10 months ago
0
hg38 refFlat and accessibility data
#837
berguner
closed
10 months ago
2
Question: Clarification on building a reference
#836
FriederikeHanssen
closed
10 months ago
3
Update hmm.py, make the window paramter activate of segment_hmm function
#835
zhuying412
closed
10 months ago
3
the false negative of segment
#833
qzhqzh
opened
11 months ago
2
Installation from VCS via pip fails during pomegranate installation
#832
kkchau
closed
9 months ago
0
negative number in cn column of *call.cns
#831
RysBen
opened
11 months ago
0
build(deps): bump scipy from 1.7.3 to 1.10.0 in /requirements
#830
dependabot[bot]
closed
10 months ago
0
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte`
#828
kamichiotti
opened
1 year ago
1
Can the results of CNVKIT be applied to clinical clinical?
#827
jinhuili-lab
opened
1 year ago
0
`import-rna` not compatible with pandas 2
#826
pontushojer
opened
1 year ago
1
For paired-WGS, is it necessary step of markduplicates by PICARD?
#825
a00101
opened
1 year ago
1
How to normalise different sequencing coverage samples in CNVKit?
#824
tanbiswas
opened
1 year ago
1
What are the specific steps to run for cnvkit.py batch -m wgs?
#823
yangdingyangding
opened
1 year ago
0
Update included references for hg38
#822
marchoeppner
opened
1 year ago
1
Gender Inference in Reference Step
#821
Wonsinsin
opened
1 year ago
0
Convert SEG format and do CNVkit to analysis ?
#820
SEvisual
opened
1 year ago
0
Cnvkit call and cnvkit genemetrics_differences + scatter plot
#819
MartaRusmini
opened
1 year ago
0
Fix IndexError for export vcf
#818
pwwang
closed
1 year ago
0
Error while indexing BAM files
#817
brettChapman
opened
1 year ago
1
AttributeError: module 'pomegranate' has no attribute 'NormalDistribution' in hmm-germline
#815
mikpom
opened
1 year ago
2
diagram bars size
#814
paumarc
opened
1 year ago
0
CNV search in exomes
#813
Zenerzul
opened
1 year ago
0
Correct way to get SV BED/VCF
#812
Zenerzul
closed
1 year ago
2
scatter plot
#811
lida-R
opened
1 year ago
0
difference between batch bams vs individual bam
#810
a00101
opened
1 year ago
0
CNVkit on WGBS data
#809
QLZhouBio
opened
1 year ago
1
Interpretation of WGS data (epilepsy): Where should I commence?
#808
robertzeibich
opened
1 year ago
5
cannot find file which exists
#807
HoweLee1998
closed
1 year ago
0
CNVkit antitarget AttributeError: 'Namespace' object has no attribute 'interval' BUG
#806
khaled196
opened
1 year ago
0
cnvkit scatter -Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
#805
EllenMarieS
opened
1 year ago
0
how to convert "Log R Ratio" (log2) to CNV integer
#804
lmanchon
opened
1 year ago
0
Whole Genome sequencing CNV calling with a flat reference
#803
justin-greenblatt
opened
1 year ago
0
Autobin
#802
EmMaKaa
opened
1 year ago
0
Understand CNVkit output
#801
Nour-EddineS
opened
1 year ago
0
Update minimum supported Python version from 3.7 to 3.8
#800
etal
closed
1 year ago
0
Annotate functions with types for mypy static checking
#799
etal
closed
1 year ago
0
Docker updates
#798
etal
closed
1 year ago
0
precision the CN to decimal and annotate the area where the copy occurs
#797
user-tq
opened
1 year ago
1
How to find out the version of cnvkit installed on my computer?
#796
justin-greenblatt
closed
1 year ago
1
Static code analysis and autoformatting: pylint and black
#795
etal
closed
1 year ago
0
Documentation refresh
#794
etal
closed
1 year ago
0
GHA CI setup
#793
etal
closed
1 year ago
0
Enable pytest to run the existing unittest suite
#792
etal
closed
1 year ago
0
Bump numpy from 1.21.6 to 1.22.0 in /requirements
#791
dependabot[bot]
closed
1 year ago
2
Packaging revamp
#790
etal
closed
1 year ago
0
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