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etal
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cnvkit
Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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Unable to use fix without antitarget file for WGS samples
#894
GACGAMA
opened
3 days ago
0
Improper post-processing of segment [bug]
#893
GACGAMA
opened
4 days ago
0
Getting BAF and allelic imbalance in export vcf
#892
GACGAMA
opened
1 week ago
0
Unable to produce .cnr files
#891
nithishak
opened
1 week ago
2
Installation error
#890
mikewojnowicz
opened
2 weeks ago
1
No Results
#889
rmormando
opened
2 weeks ago
1
build(deps): bump scikit-learn from 1.2.1 to 1.5.0 in /requirements
#888
dependabot[bot]
opened
2 weeks ago
0
how to install the cnvkit v0.9.11 by the tar.gz source
#887
litun-fkby
opened
3 weeks ago
0
Running CNVkit with VCF files
#886
GACGAMA
opened
3 weeks ago
0
How to merge vcfs of different samples?
#885
zyxNo1
opened
4 weeks ago
0
baits and target bed file
#884
bagieutopia
opened
4 weeks ago
0
The problem of false negative in male sex chromosomes
#883
zhuying412
opened
1 month ago
0
Using CNVkit with THetA2 and "Sample_paired.vcf"?
#882
ngs-seqer
opened
1 month ago
0
subprocess.CalledProcessError when segmenting
#881
sainsachiko
opened
2 months ago
3
Update conda recipe with build.run_exports version pin (#877)
#880
etal
opened
2 months ago
0
Command fixes
#879
etal
closed
2 months ago
0
Fix deprecation-related errors and warnings
#878
etal
closed
2 months ago
0
Next release?
#877
gabeng
opened
2 months ago
10
CNVkit batch issue
#876
NIBIL401
closed
2 months ago
2
dockerhub link is dead (typo)
#875
nickhsmith
closed
2 months ago
1
Why are the log2 values of the chrX in the female reference I constructed mostly around 1?
#874
zhuying412
opened
4 months ago
0
Fix typos
#873
mr-c
closed
4 months ago
1
Issue in running cnvkit.py diagram command
#872
korol996
closed
2 months ago
2
Use correct PAR1/2 start positions.
#870
rollf
closed
4 months ago
1
Allow using reference fasta with reference cnn in cnvkit batch when processing crams
#869
IvantheDugtrio
opened
4 months ago
1
Runtime Error Using CNVKit Batch
#868
hkarakurt8742
opened
4 months ago
1
cnvkit.py batch hangs on very large WGS dataset
#867
gtollefson
opened
5 months ago
0
pysam.idxstats
#866
raygozag
opened
5 months ago
0
Need Help with generating Gene level Copy Number Ratio
#865
MaxSimonNm
opened
5 months ago
1
Best practices for creating a WGS pooled reference
#864
IvantheDugtrio
opened
5 months ago
0
sex allocation incorrect for males; antitarget used over target
#863
alexander-e-f-smith
opened
6 months ago
0
TypeError: batch_run_sample() takes from 16 to 17 positional arguments but 18 were given
#862
nash5202
closed
2 months ago
1
Allow manual tuning of smoothing window fraction
#860
kkchau
closed
6 months ago
1
Smoothing window fraction fix results in noisier data in targeted sequencing panel?
#859
kkchau
opened
7 months ago
1
Adding gene diagram to heat map
#858
evcon131
opened
7 months ago
0
what are the steps for Germline and Somatic CNV detection using CNVkit?
#857
ahmadsam66
opened
8 months ago
0
What format is the input bam file?
#856
luckilyG
opened
8 months ago
0
What's the mean of CN column?
#855
yuanpingdu
opened
8 months ago
0
cnvkit.py export bed
#854
lmanchon
opened
8 months ago
0
cnvkit for multiple wgs cohort
#853
zhaowsong
closed
6 months ago
0
question about the segment threshold
#852
litun-fkby
opened
8 months ago
0
Fix sample gender input #843
#851
28rietd
closed
7 months ago
1
TypeError and AttributeError when running 'cnvkit.py target baits.bed --annotate refFlat.txt --split -o targets.bed'
#850
Lei-Guo
opened
9 months ago
0
Can I use cnvkit software to evaluate the copy number of genes ?
#849
zhoudreames
opened
9 months ago
0
Error Installing CNVKit via Miniconda
#848
James-Brundage
closed
9 months ago
1
CNVkit for RNA-seq: log2 in *.cnr file is all zero
#847
jingyu9603
opened
9 months ago
0
sex inference and X chromosome copy number
#846
albamasmalavila
opened
9 months ago
0
Why adding a pseudocount of flat reference to the aggregated reference?
#845
28rietd
opened
9 months ago
0
Update minor version of pomegranate
#844
kkchau
closed
9 months ago
1
We could not set the gender of the sample correctly in reference.py
#843
ccoo22
closed
7 months ago
2
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