issues
search
geneontology
/
pathways2GO
Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
8
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
HS-GAG degradation (R-HSA-2024096)
#169
ukemi
opened
2 years ago
0
keratan sulfate biosynthesis (R-HSA-2022854)
#168
ukemi
opened
2 years ago
0
Set up projects to track progress and tasks for Reactome2GO
#167
ukemi
closed
2 years ago
6
Linker synthesis (R-HSA-1971475)
#166
ukemi
opened
2 years ago
0
Heparan sulfate biosynthesis (R-HSA-2022928)
#165
ukemi
opened
2 years ago
0
Chondroitin sulfate biosynthesis (R-HSA-2022870)
#164
ukemi
closed
2 years ago
1
Reactome version 81 (June 2022)
#163
ukemi
closed
2 years ago
1
Create an SOP for Reactome model updates at every Reactome Release
#162
ukemi
closed
1 year ago
0
Translate complexes for SGD pathways
#161
dustine32
closed
2 years ago
1
Immediate Reload Reactome Pathways
#160
ukemi
closed
2 years ago
72
Extract BP terms via MetaCyc identifiers for SGD pathways
#159
dustine32
closed
1 year ago
6
SGD-to-EC lookup for determining reaction function term
#158
dustine32
closed
2 years ago
1
Reactome: indistinguishable EWAS (discussion needed)
#157
nataled
closed
9 months ago
6
Reactome: indistinguishable EWAS (errors/incomplete representations)
#156
nataled
closed
2 years ago
4
Reactome: identical EWAS
#155
nataled
closed
2 years ago
9
Translate complexes for SGD pathways
#154
dustine32
closed
1 year ago
3
Reactome: normalization of GPI-anchored proteins
#153
nataled
closed
2 years ago
1
Reactome: review of 'acyl-GPI' cases
#152
nataled
closed
2 years ago
3
Reactome: are these modifications redundant?
#151
nataled
closed
2 years ago
3
Reactome: question about GO cellular component for GPI-anchored proteins
#150
nataled
closed
2 years ago
3
Reactome: possible name errors
#149
nataled
closed
2 years ago
12
Reactome: GPI-anchored proteins with incorrect sequence range
#148
nataled
closed
2 years ago
1
Reactome: GPI-FOLR1 errors
#147
nataled
closed
2 years ago
3
Reactome: R-HSA-5683569 has multiple issues
#146
nataled
closed
1 year ago
3
Reactome: EWASes to be deleted
#145
nataled
closed
2 years ago
17
Write a script to capture the status of Reactome entities in PRO
#144
nataled
closed
2 years ago
6
in_taxon is being used as an annotation property
#143
balhoff
closed
2 years ago
1
For YeastPathways, use stepDirection instead of conversionDirection
#142
dustine32
closed
1 year ago
4
Determine single function term for YeastPathways reaction activities
#141
dustine32
closed
1 year ago
6
Ensure used EC2GO mapping is to GO function term
#140
dustine32
closed
1 year ago
5
Do not use ChEBI roles as physical entities - fall back on chemical entity
#139
dustine32
closed
2 years ago
3
RHEA2GO?
#138
mileswhen
closed
2 years ago
10
Anonymous blank nodes cause problems in Query engines with R2RML mappings
#137
mileswhen
closed
1 year ago
2
IUPHAR drug mappings missing in 2021-05-01 released reacto.owl
#136
dustine32
closed
2 years ago
13
Setting reacto.owl URL to 2021-02-01 in test catalog
#135
dustine32
closed
3 years ago
0
Identify grouping pathways in Reactome
#134
deustp01
opened
3 years ago
2
mis-assignment of BP term in Reactome pathway R-HSA-112311 "neurotransmitter clearance"
#133
deustp01
closed
3 years ago
1
Create a few 'NOT' models to experiment with species differences
#132
ukemi
opened
3 years ago
1
Create Reactome reactions for the dehydrogenase activity of XDH
#131
deustp01
closed
3 years ago
1
Change mapping of R-HSA-2395872 from GO:0008828 to GO:0016818 or request a new term
#130
ukemi
closed
3 years ago
2
Change R-HSA-2395876 mapping from GO:0017110 to GO:0044716
#129
ukemi
closed
3 years ago
1
Change mapping of R-HSA-2395873 from GO:0044715 to GO:0044716
#128
ukemi
closed
3 years ago
1
Change R-HSA-74247 to map to hypoxanthine oxidase activity (GO:0070675)
#127
ukemi
closed
3 years ago
4
Move source link to comment field; Set contributor to some value in users.yaml
#126
dustine32
closed
11 months ago
12
Parse taxon from biopax when creating REACTO. Don’t assert taxon for complexes.
#125
balhoff
closed
3 years ago
0
Remove extra scowl dependency, caused duplicate scala versions.
#124
balhoff
closed
3 years ago
0
Add link to Reactome biopax
#123
balhoff
closed
3 years ago
0
two REACTO classes are asserted to be in both E. coli and human
#122
balhoff
closed
3 years ago
6
Filtering by gene does not return Reactome models
#121
ukemi
closed
2 years ago
6
The group is incorrect in the Reactome imports
#120
ukemi
closed
1 year ago
3
Previous
Next